Jatropha Genome Database

JcCA0153811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.10 - phase: 0 
         (120 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13820.1 | Symbols:  | hydrolase, alpha/beta fold family prot...   130   2e-31
AT5G39220.1 | Symbols:  | hydrolase, alpha/beta fold family prot...   129   5e-31

>AT1G13820.1 | Symbols:  | hydrolase, alpha/beta fold family protein
           | chr1:4735622-4737617 FORWARD
          Length = 339

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 70/89 (78%)

Query: 19  LQVGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLG 78
           + V F    IMSSCV PL++++ +PVVLLH FDSSCLEWR TYPLLE+AGLE WA D+LG
Sbjct: 60  VSVSFREDSIMSSCVTPLMRNETTPVVLLHGFDSSCLEWRYTYPLLEEAGLETWAFDILG 119

Query: 79  WGFSDLEMRPPCDVASKRYHLYQVTPSYI 107
           WGFSDL+  PPCDVASKR H Y+   S+I
Sbjct: 120 WGFSDLDKLPPCDVASKREHFYKFWKSHI 148


>AT5G39220.1 | Symbols:  | hydrolase, alpha/beta fold family protein
           | chr5:15705913-15708039 FORWARD
          Length = 330

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%), Gaps = 1/90 (1%)

Query: 19  LQVGFPGKCIMSSCVKPLIK-SQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVL 77
           LQ+G     +MSSC+KPL++    SPVVLLHCFDSSCLEWR TYPLLE A LE WA+DVL
Sbjct: 58  LQMGNFRGSVMSSCIKPLVQLHDKSPVVLLHCFDSSCLEWRRTYPLLEQACLETWAIDVL 117

Query: 78  GWGFSDLEMRPPCDVASKRYHLYQVTPSYI 107
           GWGFSDLE  PPCD ASKR+HL+++  +YI
Sbjct: 118 GWGFSDLEKLPPCDAASKRHHLFELWKTYI 147