Jatropha Genome Database

JcCA0153601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153601.20 + phase: 0 
         (240 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15130.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   362   e-100

>AT1G15130.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr1:5206217-5209848 REVERSE
          Length = 846

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 206/227 (90%), Gaps = 1/227 (0%)

Query: 6   SAAATTNIMLAIYEKKTTSVDLYRPLRNYIAMFYSEREAQNLEDDLQTLKQYRTDVERQS 65
           ++++ +N+MLAI+EKKT+SVDLYRPLRNY+   YSEREAQ ++DDL+TLKQ R+D+ER S
Sbjct: 2   ASSSLSNLMLAIHEKKTSSVDLYRPLRNYVTFTYSEREAQLIDDDLETLKQLRSDIERVS 61

Query: 66  DPSPTSRRDLLQNYYKALCLVETRFPISPDKDHINSVTFVWYDAFKQKQKASQQNIHLEK 125
           DPSP +RRDLL +YYK LCLVETRFPISPDKDH+N+V+FVWYDAFKQK KA+QQNIHLEK
Sbjct: 62  DPSPAARRDLLISYYKVLCLVETRFPISPDKDHVNAVSFVWYDAFKQKHKATQQNIHLEK 121

Query: 126 AAILFNLGAVYSQIGLSFDRTTVEGRRQAIHSFIAAAGAFAYLRDNAATKASMGSSTTVD 185
           AA+LFNLGA YSQIGL  DRTTV+GRRQA H+F+AAAGAFA+LRDN + KA++G STTVD
Sbjct: 122 AAVLFNLGASYSQIGLGHDRTTVDGRRQASHAFMAAAGAFAHLRDNESIKATIGPSTTVD 181

Query: 186 VSVECVGMLERLMLAQAQECVFENTIAKGSTPGVCAKIARQVSGNFF 232
           VSVECVGMLERLM+AQAQECVFENTIAKGSTPGV AKIARQV G F+
Sbjct: 182 VSVECVGMLERLMVAQAQECVFENTIAKGSTPGVSAKIARQV-GIFY 227