Jatropha Genome Database

JcCA0153521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153521.20 + phase: 0 
         (226 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67700.2 | Symbols:  | unknown protein | chr1:25374295-253758...   354   2e-98
AT1G67700.1 | Symbols:  | unknown protein | chr1:25374295-253757...   354   3e-98

>AT1G67700.2 | Symbols:  | unknown protein | chr1:25374295-25375810
           FORWARD
          Length = 231

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 196/231 (84%), Gaps = 6/231 (2%)

Query: 1   MEVGLSLNALVRLPLSNSSRTHEDVLVKHSLFTSRTGQKS---QHRKTLLVVNAKGKRGM 57
           MEV +SLNAL RLPL N+ R  E  L +HSLF+SRT  +    Q R+ + VV AKGK+GM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 58  QARQFQRPPAPSLPKIEDDGNPKFLIFIRMANVYLWYPLSLVTGGTTAKITVAAKDNFLG 117
            ARQ+QR P P +PKIEDDGNP+F+IFIRMANVYLWYPLS++ GGTTAKI VAAKDN LG
Sbjct: 61  AARQYQRTP-PPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 119

Query: 118 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQYRVLRSATEFRYGYKLVENGNMRAALSTSD 177
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ+RVLR+ATEFRYGYKLVENGNMRAALSTSD
Sbjct: 120 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSD 179

Query: 178 VIELPTEDQLKTVFDKVKDFFGGAKESFGKLTALN--SAEETEEVSKENTK 226
           VIELPT+DQLKTVFDKVKD+FG AKESFGKL++LN  S E+TEE S E  K
Sbjct: 180 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 230


>AT1G67700.1 | Symbols:  | unknown protein | chr1:25374295-25375716
           FORWARD
          Length = 230

 Score =  354 bits (908), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 196/231 (84%), Gaps = 6/231 (2%)

Query: 1   MEVGLSLNALVRLPLSNSSRTHEDVLVKHSLFTSRTGQKS---QHRKTLLVVNAKGKRGM 57
           MEV +SLNAL RLPL N+ R  E  L +HSLF+SRT  +    Q R+ + VV AKGK+GM
Sbjct: 1   MEVSMSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGM 60

Query: 58  QARQFQRPPAPSLPKIEDDGNPKFLIFIRMANVYLWYPLSLVTGGTTAKITVAAKDNFLG 117
            ARQ+QR P P +PKIEDDGNP+F+IFIRMANVYLWYPLS++ GGTTAKI VAAKDN LG
Sbjct: 61  AARQYQRTP-PPMPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLG 119

Query: 118 KYIYKDTLARNLAAVIYRDEKEIQKTAFKQYRVLRSATEFRYGYKLVENGNMRAALSTSD 177
           KYIYKDT+ARN+AAVIYRDEKEIQKTA KQ+RVLR+ATEFRYGYKLVENGNMRAALSTSD
Sbjct: 120 KYIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSD 179

Query: 178 VIELPTEDQLKTVFDKVKDFFGGAKESFGKLTALN--SAEETEEVSKENTK 226
           VIELPT+DQLKTVFDKVKD+FG AKESFGKL++LN  S E+TEE S E  K
Sbjct: 180 VIELPTQDQLKTVFDKVKDYFGDAKESFGKLSSLNPGSDEKTEETSDEKAK 230