Jatropha Genome Database

JcCA0153321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153321.10 - phase: 0 
         (588 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);...   560   e-160
AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...    53   5e-07
AT1G04730.1 | Symbols:  | AAA-type ATPase family protein | chr1:...    52   2e-06
AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...    51   2e-06
AT1G77620.1 | Symbols:  | nucleoside-triphosphatase/ nucleotide ...    49   9e-06

>AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);
           ATP binding / DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr5:7280632-7287037 REVERSE
          Length = 956

 Score =  560 bits (1444), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 321/540 (59%), Positives = 378/540 (70%), Gaps = 19/540 (3%)

Query: 1   MKAHDKGNGNAAKPAQLATTKTEKKPP--SVESKPERPAQGGE--ENSGRRKTSKYFAKD 56
           MKAH+KGNG+A K     +T ++  P   + E+ P +  Q  E  E + RRKTSKYF KD
Sbjct: 9   MKAHEKGNGSAPK-----STSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYFGKD 63

Query: 57  KQKPKAEKEVDELPAKRKTQNDANESVKLPPLKKIHKVXXXXXXXXFVLPDKKKSVDATP 116
           K K K EKEV+ +PAKRK + ++++ VK  P +K+ KV         V P  +K+ D TP
Sbjct: 64  KTKVKDEKEVEAIPAKRKLKTESDDLVKPRP-RKVTKVVDDDDDDFDV-PISRKTRDTTP 121

Query: 117 SKKLKTVSGRGXXXXXXXXXXXXXXXXXXXXXLKXXXXXXXXXXXXXXXXXXXXXXXXXX 176
           SKKLK+ SGRG                     LK                          
Sbjct: 122 SKKLKSGSGRGIASKTVDNDDDDDGEDKETP-LKSAGRGRGGRAAPGASTGGRGRGGGRG 180

Query: 177 XFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 236
            FMNFGERKDPPHKGEKEVPEG PDCLAGLTFVISGTLDSLEREEAEDLIKRHGGR+TGS
Sbjct: 181 GFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGS 240

Query: 237 VSKKTNYLLCDEDIEGRKSSKAKELGTPFLTEDGLFNMIRSSKAKAPALNE-AKESVKKV 295
           VSKKT YLLCDEDI GRKS KAKELGT FLTEDGLF++IRSSK    +L E + +  +K+
Sbjct: 241 VSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLPERSNKGTEKI 300

Query: 296 ASQPKKSPEKAEVKCNSITKNGSRKDSTSGVSPAKQKERTNICSSLPWTEKYRPKAPNDI 355
            + PK SP+K E +   + K+  +K     V PAK K +  I +SLPWTEKYRPK PN+I
Sbjct: 301 CAPPKTSPQKEETRGKPLAKSSPKK-----VPPAKGKNKI-IETSLPWTEKYRPKVPNEI 354

Query: 356 IGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVLLSGTPGIGKTTAAKLVS 415
           +GNQSLV QLH+WL +W +QF GTG+KGK KK ND+G+KKAVLLSGTPGIGKTT+AKLVS
Sbjct: 355 VGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAKLVS 414

Query: 416 RMLGFQAIEVNASDSRGKADNKISKGIGGSNANCIKELVSNEALGVNMDRSKHPKTVLIM 475
           +MLGFQA+EVNASDSRGKA++ I+KGIGGSNAN +KELV+NEA+  N DRSKHPKTVLIM
Sbjct: 415 QMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTVLIM 474

Query: 476 DEVDGMSAGDRGGVADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCLLLSFRKPTKQQV 535
           DEVDGMSAGDRGGVADL               NDRYSQKLKSLVNYCL L++RKPTKQQ+
Sbjct: 475 DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQM 534


>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
           chr1:23422068-23423771 REVERSE
          Length = 333

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 40/148 (27%)

Query: 342 PWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVLLSG 401
           PW EKYRP    DI+GN+  V++L    ++                    G    ++LSG
Sbjct: 16  PWVEKYRPSKVVDIVGNEDAVSRLQVIARD--------------------GNMPNLILSG 55

Query: 402 TPGIGKTTAA-KLVSRMLGFQ----AIEVNASDSRGKADNKISKGIGGSNANCIKELVSN 456
            PG GKTT+   L   +LG       +E+NASD RG    +          N IK     
Sbjct: 56  PPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVR----------NKIKMFAQK 105

Query: 457 EALGVNMDRSKHPKTVLIMDEVDGMSAG 484
           +   V +   +H   V+I+DE D M++G
Sbjct: 106 K---VTLPPGRH--KVVILDEADSMTSG 128


>AT1G04730.1 | Symbols:  | AAA-type ATPase family protein |
           chr1:1325385-1331086 REVERSE
          Length = 954

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 16/99 (16%)

Query: 394 KKAVLLSGTPGIGKTTAAKLVSRMLGFQAIEVNASDSRGKADNKISKGIGGSNANCIKEL 453
           +K +LL G PG+GKTT A + ++  G++ +E+NASD R              +A+ I+  
Sbjct: 345 QKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDER--------------SASAIETR 390

Query: 454 VSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGVADL 492
           + +     ++     PK  L++DE+DG + GD  G  D+
Sbjct: 391 ILDVVQMNSVTADSRPK-CLVIDEIDG-ALGDGKGAVDV 427


>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 339

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 40/153 (26%)

Query: 339 SSLPWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVL 398
           SS PW EKYRPK   D+   + +V  L + L+  D   +                    L
Sbjct: 7   SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHM--------------------L 46

Query: 399 LSGTPGIGKTTAAKLVSRMLG------FQAIEVNASDSRGKADNKISKGIGGSNANCIKE 452
             G PG GKTT A  ++  L        + +E+NASD RG   N +   I    A     
Sbjct: 47  FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVVRTKIKDFAA----- 99

Query: 453 LVSNEALGVNMDRSKHP---KTVLIMDEVDGMS 482
                A+G N  +S +P     ++I+DE D M+
Sbjct: 100 ----VAVGSNHRQSGYPCPSFKIIILDEADSMT 128


>AT1G77620.1 | Symbols:  | nucleoside-triphosphatase/ nucleotide
           binding | chr1:29167934-29172867 REVERSE
          Length = 1151

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 38/190 (20%)

Query: 338 CSSLPWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQ-------FLGTG-NKGKSKKQN 389
           C+ L W +KY+P++ +++ GN   V  ++ WL+ W E+       FL +  +K +    N
Sbjct: 309 CNRL-WVDKYQPRSASEVCGNTESVKVMNEWLRQWYERGFQPNKDFLSSDEDKSQDADYN 367

Query: 390 -------------DSGAKKAVLLSGTPGIGKTTAAKLVSRMLGFQAIEVNASDSR----- 431
                        +   K  +L+ G  G GK+ A    ++  GF+ +E N S+ R     
Sbjct: 368 CSESDSDSEKSGAEDSQKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVV 427

Query: 432 ----GKA--DNKISKGI-----GGSNANCIKELVSNEALGVNMDRSKHPKTVLIMDEVDG 480
               G+A     +S+ +       ++ N ++++V    +    +   + K +++ ++VD 
Sbjct: 428 RQKFGEALKSYSLSRSLDPLFNSCTDGNGVEDVVEVMPVLHIQNDGANLKPLILFEDVDI 487

Query: 481 MSAGDRGGVA 490
             A DRG V+
Sbjct: 488 CFAEDRGLVS 497