Jatropha Genome Database
- JcCA0152991.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0152991.30 + phase: 0 /partial
(320 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PRO... 370 e-103
AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2... 338 2e-93
AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknow... 99 3e-21
AT4G15475.1 | Symbols: | F-box family protein (FBL4) | chr4:884... 95 5e-20
AT5G01720.1 | Symbols: | F-box family protein (FBL3) | chr5:267... 75 8e-14
AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1); ubiq... 73 2e-13
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 73 3e-13
AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:7497479-7499386 FORWARD 72 5e-13
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protei... 70 3e-12
AT4G07400.1 | Symbols: VFB3 | VFB3 (VIER F-BOX PROTEINE 3); ubiq... 67 1e-11
AT3G58530.1 | Symbols: | F-box family protein-related | chr3:21... 65 5e-11
AT5G57900.1 | Symbols: SKIP1 | SKIP1 (SKP1 INTERACTING PARTNER 1... 58 8e-09
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTIN... 58 1e-08
AT3G07550.2 | Symbols: | F-box family protein (FBL12) | chr3:24... 57 1e-08
AT3G07550.1 | Symbols: | F-box family protein (FBL12) | chr3:24... 57 1e-08
AT2G06040.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
AT4G30640.1 | Symbols: | F-box family protein (FBL19) | chr4:14... 57 2e-08
AT1G80630.1 | Symbols: | leucine-rich repeat family protein | c... 55 4e-08
AT4G33210.1 | Symbols: | F-box family protein (FBL15) | chr4:16... 55 5e-08
AT3G50080.1 | Symbols: VFB2 | VFB2 (VIER F-BOX PROTEINE 2); ubiq... 55 8e-08
AT5G07670.1 | Symbols: | F-box family protein | chr5:2430421-24... 54 1e-07
AT5G67140.1 | Symbols: | F-box family protein | chr5:26794009-2... 54 2e-07
AT1G55590.1 | Symbols: | F-box family protein | chr1:20769476-2... 49 3e-06
AT1G80570.1 | Symbols: | F-box family protein (FBL14) | chr1:30... 48 9e-06
AT1G80570.3 | Symbols: | F-box family protein (FBL14) | chr1:30... 48 9e-06
AT1G80570.2 | Symbols: | F-box family protein (FBL14) | chr1:30... 48 1e-05
>AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX
PROTEIN 1); protein binding / ubiquitin-protein ligase |
chr2:10848018-10850275 REVERSE
Length = 628
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/322 (60%), Positives = 244/322 (75%), Gaps = 18/322 (5%)
Query: 1 MSKLFGFAGDDDFCPGGPIYANPKEASLLLSLGRHVDVYFPSRKRSRISAPFVLVGERFE 60
MS++F FAG++DF G IY NPK+ASLLLSLG DVYFP KRSR+ AP + FE
Sbjct: 1 MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSKRSRVVAPTIF--SAFE 58
Query: 61 QKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLLN 120
KK SI+VLPDECLFEIFRRL G +ERSACA VSK+WL L+S++ + E+ +
Sbjct: 59 -KKPVSIDVLPDECLFEIFRRLSGPQERSACAFVSKQWLTLVSSIRQKEI---------D 108
Query: 121 ESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRG--V 178
++ + +D E G LSRSL+GKKATD+ LAAIAVGT+ RGGLGKLSIRGS V
Sbjct: 109 VPSKITEDGDDCE----GCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAKV 164
Query: 179 TSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAI 238
+ +GLR+I R CPSL +LSLWN+ ++ + GL EIA GC LEKL+L C I+DKGL+AI
Sbjct: 165 SDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAI 224
Query: 239 AKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVL 298
AKSCPNLTELT+E+C+ IG++GL AI + C+ LKS+SIK+CP+V DQGIASL+S+ TC L
Sbjct: 225 AKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSL 284
Query: 299 AKLKLQSLNITDVSLAVIGHYG 320
AKLKLQ LN+TDVSLAV+GHYG
Sbjct: 285 AKLKLQMLNVTDVSLAVVGHYG 306
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 190 CPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKS-------- 241
C +LR+LS+ N P G+ L I C LE +DLCG I++ G L + +S
Sbjct: 440 CSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQSSLVKINFS 499
Query: 242 -CPNLTE----------------LTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGD 284
C NLT+ L I+ C+NI + L +I C L + I C + D
Sbjct: 500 GCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKC-AISD 558
Query: 285 QGIASLVSSATCVLAKLKLQSLN------ITDVSLAVIGHYG 320
GI +L SS KLKLQ L+ +TD SL I G
Sbjct: 559 SGIQALASS-----DKLKLQILSVAGCSMVTDKSLPAIVGLG 595
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 167 LGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCG 226
L L+I +GVT +GL ++ +GCP+++ + P + + GL A LE L L
Sbjct: 337 LNSLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEE 396
Query: 227 CPAISDKGLLAIAKSC-PNLTELTIESCANIGN--DGLQAIGQCCNNLKSISIKDCPVVG 283
C ++ G +C L ++ +C +I + GL A C+ L+S+SI++CP G
Sbjct: 397 CHRVTQFGFFGSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSH-CSALRSLSIRNCPGFG 455
Query: 284 DQGIASL 290
D +A++
Sbjct: 456 DANLAAI 462
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 151 DIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLF 210
D G+A++ T+ L KL ++ VT V L + S+ L L L V +G +
Sbjct: 270 DQGIASLLSNTTC--SLAKLKLQ-MLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFW 326
Query: 211 EIANGCHM--LEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCC 268
+ NG + L L + C ++D GL ++ K CPN+ + I + ++GL + +
Sbjct: 327 VMGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKAS 386
Query: 269 NNLKSISIKDCPVVGDQGI 287
+L+S+ +++C V G
Sbjct: 387 LSLESLQLEECHRVTQFGF 405
>AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2);
protein binding | chr5:8794842-8796882 REVERSE
Length = 623
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/323 (57%), Positives = 235/323 (72%), Gaps = 30/323 (9%)
Query: 1 MSKLFGFAGDDDFCPGGPIYANPKEASLLLSLGRHVDVYFPSRKRSRISAPFVLVGERFE 60
MS +F F+GD+D GG +Y +P G VY+P+RKR R++A G FE
Sbjct: 1 MSGIFRFSGDEDCLLGGSMYLSP---------GSCPGVYYPARKRLRVAATSFYSG--FE 49
Query: 61 QKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLLN 120
+K Q SI+VLP+ECLFEI RRLP G+ERSACACVSK WL LLS++SR E+ N
Sbjct: 50 EK-QTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEV---------N 99
Query: 121 ESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGS---RG 177
ES+ +D+E E +G+LSRSLEGKKATD+ LAAIAVGTSSRGGLGKL IRGS
Sbjct: 100 ESS-----VQDVE-EGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESK 153
Query: 178 VTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLA 237
VT VGL A+A GCPSLR +SLWNLP+V + GL EIA C M+EKLDL CP I+D GL+A
Sbjct: 154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVA 213
Query: 238 IAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV 297
IA++C NL++LTI+SC+ +GN+GL+AI + C NL+SISI+ CP +GDQG+A L++ A
Sbjct: 214 IAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSY 273
Query: 298 LAKLKLQSLNITDVSLAVIGHYG 320
L K+KLQ LN++ +SLAVIGHYG
Sbjct: 274 LTKVKLQMLNVSGLSLAVIGHYG 296
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 167 LGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCG 226
L LS+ RG+T VGL A+ GCP L+ +SL V +GL +A LE L L
Sbjct: 327 LKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEE 386
Query: 227 CPAISDKGLLAIAKSCPN-----------------------------LTELTIESCANIG 257
C I+ GL+ +C + L L+I C G
Sbjct: 387 CHRINQFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFG 446
Query: 258 NDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKL-QSLNITDVSLAVI 316
+ L +G+ C+ L+ + + V D G+ L+ S L K+ L + +N++D +++ I
Sbjct: 447 DASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAI 506
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 170 LSIRGSRGVTSVGLRAI--ARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGC 227
L + G +GV G + A+G L++LS+ + + + GL + NGC L+ + L C
Sbjct: 302 LVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKC 361
Query: 228 PAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQA-IGQCCNNLKSISIKDCPVVGD 284
+S KGL+A+AKS +L L +E C I GL + C + LK+ S+ +C + D
Sbjct: 362 LLVSGKGLVALAKSALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGISD 419
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 39/161 (24%)
Query: 194 RALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKS------------ 241
R+LS+ P G+ L + CH L+ ++LCG ++D G+ + +S
Sbjct: 435 RSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSE 494
Query: 242 CPNLTE----------------LTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQ 285
C N+++ L ++ C NI N L A+ + C ++ + I + +V D
Sbjct: 495 CINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISN-TLVSDH 553
Query: 286 GIASLVSSATCVLAKLKLQSL------NITDVSLAVIGHYG 320
GI +L SS L LQ L +ITD S A I G
Sbjct: 554 GIKALASSPN----HLNLQVLSIGGCSSITDKSKACIQKLG 590
>AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: F-box family
protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits
to 3545 proteins in 210 species: Archae - 0; Bacteria -
454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses
- 15; Other Eukaryotes - 1159 (source: NCBI BLink). |
chr5:7856314-7857983 FORWARD
Length = 405
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 68 EVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLLNESAEKNG 127
E L D+ L + RL +++ V KRWL L S R +L ++ +L A +
Sbjct: 8 EALTDDELRWVLSRLDSDKDKEVFGLVCKRWLNLQST-DRKKLAARAGPHMLRRLASRFT 66
Query: 128 EAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIA 187
+ +L++ +SRS TD LA I+ G L L++ +G+T GL +I
Sbjct: 67 QIVELDLSQS--ISRSFY-PGVTDSDLAVISEGFK---FLRVLNLHNCKGITDTGLASIG 120
Query: 188 RGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTE 247
R L+ L + + ++GL +A GCH L L L GC I+D+ L ++++ C +L
Sbjct: 121 RCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEA 180
Query: 248 LTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKL 303
L ++ C NI + GL + + C +KS+ I C VGD G++S+ + L LKL
Sbjct: 181 LGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKL 236
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
Query: 150 TDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPS-LRALSLWNLPSVGNEG 208
TD GLA + G + L I V G+ ++A+ C S L+ L L + VGNE
Sbjct: 190 TDSGLADLVKGCRK---IKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNES 246
Query: 209 LFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPN-LTELTIESCANIGNDGLQAIGQC 267
+ +A C LE L + GC ISD+ ++ +A SC + L L ++ C NI + L I +
Sbjct: 247 ISSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQ 306
Query: 268 CNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKLQSLNITDVSLAVIG 317
C NL+++ I C V D L S L LK+ N T +++ IG
Sbjct: 307 CKNLEALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVS--NCTKITVTGIG 354
>AT4G15475.1 | Symbols: | F-box family protein (FBL4) |
chr4:8845927-8848701 FORWARD
Length = 610
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Query: 153 GLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEI 212
GL AIA G L ++ I G + + G+ AI + CP L+ L+L +GN L EI
Sbjct: 337 GLEAIAHGCKE---LERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEI 393
Query: 213 ANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLK 272
GC LE L L C I D + +IAK C NL +L I C IGN G+ +IG+ C +L
Sbjct: 394 GKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLT 453
Query: 273 SISIKDCPVVGDQGIASLVSSATCVLAKLKLQSLN-ITDVSLAVIG 317
+S++ C VG++ + ++ C L +L + N I+D + I
Sbjct: 454 ELSLRFCDKVGNKALIAI--GKGCSLQQLNVSGCNQISDAGITAIA 497
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 144 LEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPS 203
L+ TD+ AA+ +S L +L++ + T G+RAI +G L+ L+L +
Sbjct: 276 LQCVSVTDVAFAAVGELCTS---LERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYF 332
Query: 204 VGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQA 263
V +GL IA+GC LE++++ GC I +G+ AI KSCP L EL + C IGN LQ
Sbjct: 333 VSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQE 392
Query: 264 IGQCCNNLKSISIKDCPVVGDQGIASL 290
IG+ C +L+ + + DC +GD + S+
Sbjct: 393 IGKGCKSLEILHLVDCSGIGDIAMCSI 419
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 151 DIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLF 210
DI + +IA G + L KL IR + + G+ +I + C SL LSL VGN+ L
Sbjct: 413 DIAMCSIAKGCRN---LKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALI 469
Query: 211 EIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNN 270
I GC L++L++ GC ISD G+ AIA+ CP LT L I NIG+ L +G+ C
Sbjct: 470 AIGKGCS-LQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPM 528
Query: 271 LKSISIKDCPVVGDQGIASLV 291
LK + + C + D G+ LV
Sbjct: 529 LKDLVLSHCHHITDNGLNHLV 549
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 52/290 (17%)
Query: 70 LPDECLFEIFRRLPGGEERSACACVSKRWLALL----------SNMSRDELCSKKTTQLL 119
LP+E + EIFRRL R AC+ V KRWL+L ++ S D+ S + + L
Sbjct: 11 LPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRFL 70
Query: 120 NESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGV- 178
++ E + + + G+ ++ + +S R L + G+ V
Sbjct: 71 YITSIHVDERISVSLPSLSPSPKRKRGRDSS-------SPSSSKRKKLTDKTHSGAENVE 123
Query: 179 ----TSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKG 234
T GL A+A G P + LSL P+V + GL +A C L+ LDL GC + D+G
Sbjct: 124 SSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGC-YVGDQG 182
Query: 235 LLAIAKSCPNLTELTIESC---------------------------ANIGNDGLQAIGQC 267
L A+ K C L EL + C A I + L+A+G
Sbjct: 183 LAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSH 242
Query: 268 CNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKLQSLNITDVSLAVIG 317
C L+ + + D + D+G+ + V+ L LKLQ +++TDV+ A +G
Sbjct: 243 CKLLEVLYL-DSEYIHDKGLIA-VAQGCHRLKNLKLQCVSVTDVAFAAVG 290
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 133 EIEDDGYLSRSLEGKKATDIGL---------AAIAVGTSSRGGLGKLSIRGSRGVTSVGL 183
EI + G +S K T++ L A IA+G L +L++ G ++ G+
Sbjct: 436 EIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC--SLQQLNVSGCNQISDAGI 493
Query: 184 RAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCP 243
AIARGCP L L + L ++G+ L E+ GC ML+ L L C I+D GL + + C
Sbjct: 494 TAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCK 553
Query: 244 NLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVV 282
L + C I + G+ + C ++K + I+ V
Sbjct: 554 LLETCHMVYCPGITSAGVATVVSSCPHIKKVLIEKWKVT 592
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 142 RSLEGKKATDIG-LAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWN 200
+ L ++ +IG I++G + L +LS+R V + L AI +GC SL+ L++
Sbjct: 427 KKLHIRRCYEIGNKGIISIGKHCKS-LTELSLRFCDKVGNKALIAIGKGC-SLQQLNVSG 484
Query: 201 LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDG 260
+ + G+ IA GC L LD+ I D L + + CP L +L + C +I ++G
Sbjct: 485 CNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNG 544
Query: 261 LQAIGQCCNNLKSISIKDCPVVGDQGIASLVSS 293
L + Q C L++ + CP + G+A++VSS
Sbjct: 545 LNHLVQKCKLLETCHMVYCPGITSAGVATVVSS 577
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 150 TDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGL 209
TD+G+ + VG S L + + S +T + L A+ C L L L + + ++GL
Sbjct: 205 TDVGVIDLVVGCSK--SLKSIGVAASAKITDLSLEAVGSHCKLLEVLYL-DSEYIHDKGL 261
Query: 210 FEIANGCHML-------------------------EKLDLCGCPAISDKGLLAIAKSCPN 244
+A GCH L E+L L +DKG+ AI K
Sbjct: 262 IAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKGSKK 321
Query: 245 LTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASL 290
L +LT+ C + GL+AI C L+ + I C +G +GI ++
Sbjct: 322 LKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAI 367
>AT5G01720.1 | Symbols: | F-box family protein (FBL3) |
chr5:267118-270391 REVERSE
Length = 665
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 150 TDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGL 209
TD GL+ I +G S+ L +L + S G+T VG+ IA+GC L +++ + ++ L
Sbjct: 445 TDKGLSYIGMGCSN---LRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSL 501
Query: 210 FEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCN 269
++ C +L+ + GCP I+ +GL AIA C L ++ ++ C +I + GL A+
Sbjct: 502 VSLSK-CSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLALAHFSQ 560
Query: 270 NLKSISIKDCPVVGDQGIASL 290
NLK I++ D V + G+ SL
Sbjct: 561 NLKQINVSD-TAVTEVGLLSL 580
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 149 ATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEG 208
TD GL+++ + L KL I R ++ V + IA CP L +L + + V E
Sbjct: 342 VTDEGLSSLVMKLKD---LRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREA 398
Query: 209 LFEIANGCHMLEKLDLCG------------------------CPAISDKGLLAIAKSCPN 244
+ I C +LE+LDL C I+DKGL I C N
Sbjct: 399 FWLIGQKCRLLEELDLTDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSN 458
Query: 245 LTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKLQ 304
L EL + I + G+ I Q C +L++I+I C + D+ SLVS + C L LQ
Sbjct: 459 LRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDK---SLVSLSKCSL----LQ 511
Query: 305 SL------NITDVSLAVIG 317
+ NIT LA I
Sbjct: 512 TFESRGCPNITSQGLAAIA 530
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 178 VTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLA 237
VT GL+AI C SL+ +SL SV +EGL + L KLD+ C +S +
Sbjct: 316 VTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQ 375
Query: 238 IAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV 297
IA SCP L L +ESC+ + + IGQ C L+ + + D + D+G+ S+ S +
Sbjct: 376 IANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTD-NEIDDEGLKSISSCLSLS 434
Query: 298 LAKLKLQSLNITDVSLAVIG 317
KL + LNITD L+ IG
Sbjct: 435 SLKLGI-CLNITDKGLSYIG 453
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 174 GSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDK 233
G GV L+++ C SL+ L + ++ + GL + +G L++LDL C ++
Sbjct: 235 GCFGVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISL 294
Query: 234 GLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSS 293
+ K L + ++ C+ + DGL+AIG CN+LK +S+ C V D+G++SLV
Sbjct: 295 DFASSLKKVSALQSIRLDGCS-VTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLV-- 351
Query: 294 ATCVLAKLK-LQSLNIT 309
KLK L+ L+IT
Sbjct: 352 -----MKLKDLRKLDIT 363
>AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1);
ubiquitin-protein ligase | chr1:17276103-17277659
REVERSE
Length = 518
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 114 KTTQLLNESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIR 173
K+ +L S + + +++ +D G + LE + +D+ L+AI+ +S L L +
Sbjct: 236 KSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSS----LESLHLV 291
Query: 174 GSRGVTSVGLRAIARGCPSLRALSL--WNLPSVGNEGLFEIANGCHMLEKLDLCGC-PAI 230
+ T+ GL AIA C LR L + W +G+EGL +A C L++L L G P
Sbjct: 292 KTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVNPTT 351
Query: 231 SDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASL 290
G+LA C NL L + C G+ L I C L+ + IK+CP + D GI +L
Sbjct: 352 LSLGMLA--AKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCP-ISDVGIENL 408
Query: 291 VS 292
+
Sbjct: 409 AN 410
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 63/304 (20%)
Query: 42 SRKRSR-ISAPFVLVGERFEQKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLA 100
+R+RS+ + F + E + LPDECL +F+ L G R CA V +RW+
Sbjct: 14 NRRRSKSFTLKFPIESIESEISQPDYTSSLPDECLALVFQFLNSG-NRKRCALVCRRWM- 71
Query: 101 LLSNMSRDELCSKKTTQLLNESAEKNGEAEDLEIEDDGYLSRSLE-GKKATDIGLAAIAV 159
++ +R L + L+ L D SL+ +++ IG A+
Sbjct: 72 IVEGQNRYRLSLHARSDLIT-------SIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVK 124
Query: 160 GTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHML 219
+ L +L +R R +T VG+ A A C L+ S
Sbjct: 125 ISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFS---------------------- 162
Query: 220 EKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQ--CCNNLKSISIK 277
CG KG+ A+ C NL EL+I+ + + IG ++LKSI +K
Sbjct: 163 -----CGSCDFGAKGVKAVLDHCSNLEELSIKRLRGFTDIAPEMIGPGVAASSLKSICLK 217
Query: 278 DC-------PV-VGDQGIASL---------------VSSATCVLAKLKLQSLNITDVSLA 314
+ PV VG + + SL +S + ++ L+ + ++DV+L+
Sbjct: 218 ELYNGQCFGPVIVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALS 277
Query: 315 VIGH 318
I +
Sbjct: 278 AISY 281
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE
Length = 642
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 149 ATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSL--RALSLWNLPSVGN 206
TD+ ++A+A S LG L + +T GL+++ GC S+ + L L + V +
Sbjct: 364 VTDVAISAVA---QSCRNLGTLKLESCHLITEKGLQSL--GCYSMLVQELDLTDCYGVND 418
Query: 207 EGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQ 266
GL E + C L++L L C ISDKG+ I C L EL + CA G+DGL A+ +
Sbjct: 419 RGL-EYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSR 477
Query: 267 CCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKLQSL-NITDVSLAVIG 317
C +L + + C + D G+ + +L+ L+L+ L NIT V LA I
Sbjct: 478 GCKSLNRLILSYCCELTDTGVEQIRQLE--LLSHLELRGLKNITGVGLAAIA 527
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 204 VGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQA 263
V + G+ +A C L+ L+L C ++D + A+A+SC NL L +ESC I GLQ+
Sbjct: 338 VTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQS 397
Query: 264 IGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKL-QSLNITDVSLAVIG 317
+G ++ + + DC V D+G+ + + L +LKL NI+D + IG
Sbjct: 398 LGCYSMLVQELDLTDCYGVNDRGLEYISKCSN--LQRLKLGLCTNISDKGIFHIG 450
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 182 GLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKS 241
GL A++RGC SL L L + + G+ +I +L L+L G I+ GL AIA
Sbjct: 471 GLAALSRGCKSLNRLILSYCCELTDTGVEQIRQ-LELLSHLELRGLKNITGVGLAAIASG 529
Query: 242 CPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSS 293
C L L ++ C NI + G A+ NL+ I++ +C V D + L+S+
Sbjct: 530 CKKLGYLDVKLCENIDDSGFWALAYFSKNLRQINLCNCS-VSDTALCMLMSN 580
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 150 TDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGL 209
+D+GLA I VG S+ L K+S++ ++ +G+ + + C L++L + L + N+ +
Sbjct: 160 SDVGLARIVVGCSN---LNKISLKWCMEISDLGIDLLCKICKGLKSLDVSYLK-ITNDSI 215
Query: 210 FEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAI 264
IA LE LD+ CP I D GL + P+L E+ + C + GL +I
Sbjct: 216 RSIALLVK-LEVLDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISI 269
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 151 DIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLF 210
D+ L G S G+ L++ S V + GL +AR C +L + + + G+
Sbjct: 81 DVVLRLALDGAISTLGIKSLNLSRSTAVRARGLETLARMCHALERVDVSHCWGFGDREAA 140
Query: 211 EIANGCHMLE-KLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCN 269
+++ + E K+D C ++SD GL I C NL +++++ C I + G+ + + C
Sbjct: 141 ALSSATGLRELKMD--KCLSLSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKICK 198
Query: 270 NLKSISIKDCPVVGD--QGIASLV 291
LKS+ + + D + IA LV
Sbjct: 199 GLKSLDVSYLKITNDSIRSIALLV 222
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 167 LGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCG 226
L L +RG + +T VGL AIA GC L L + ++ + G + +A L +++LC
Sbjct: 507 LSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLRQINLCN 566
Query: 227 CPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQ-AIGQCCN 269
C ++SD L + + + ++ + + + +G + A+ CCN
Sbjct: 567 C-SVSDTALCMLMSNLSRVQDVDLVHLSRVTVEGFEFALRACCN 609
>AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:7497479-7499386 FORWARD
Length = 360
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 167 LGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCG 226
L +L + S +T L A+A GCP L L+L S + + + C L+ L+LCG
Sbjct: 119 LQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCG 178
Query: 227 C-PAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQ 285
C A++D L AI +C + L + C NI +DG+ ++ C +L+++ + C ++ D+
Sbjct: 179 CVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDE 238
Query: 286 GIASLVSSATCVLAKLKLQSLNITDVSLAVIGHYG 320
+ +L + + NITD ++ + G
Sbjct: 239 SVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSG 273
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 140 LSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLW 199
LS+SL K TD L A+A G L KL++ G + + + R C L+ L+L
Sbjct: 124 LSKSL---KITDRSLYALAHGCPD---LTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLC 177
Query: 200 N-LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGN 258
+ +V + L I N C+ ++ L+L C ISD G++++A CP+L L + C I +
Sbjct: 178 GCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITD 237
Query: 259 DGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSS 293
+ + A+ C +L+S+ + C + D+ + SL S
Sbjct: 238 ESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQS 272
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 182 GLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKS 241
+ AIA C L+ L L + + L+ +A+GC L KL+L GC + SD + + +
Sbjct: 108 AVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRF 167
Query: 242 CPNLTELTIESCAN-IGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASL 290
C L L + C + ++ L+AIG CN ++S+++ C + D G+ SL
Sbjct: 168 CRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSL 217
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protein
ligase | chr1:28940888-28942401 FORWARD
Length = 360
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 145 EGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWN-LPS 203
+ K TD L ++A G ++ L KL++ G + L + R C L+ L+L + +
Sbjct: 126 KSSKITDHSLYSLARGCTN---LTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEA 182
Query: 204 VGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQA 263
V + L I C+ L+ L+L C ISD G++++A CP+L L + SC I ++ + A
Sbjct: 183 VSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVA 242
Query: 264 IGQCCNNLKSISIKDCPVVGDQGIASLVSS 293
+ C +L+S+ + C + D+ + SL S
Sbjct: 243 LANRCIHLRSLGLYYCRNITDRAMYSLAQS 272
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 166 GLGKLSIRGSRGVTSVGLRAIARGCPSLRALSL-WNLPSVGNEGLFEIANGCHMLEKLDL 224
GL +LS+ + + + ++A L+ L L + P + + + IAN CH L+ LDL
Sbjct: 65 GLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDL 124
Query: 225 CGCPAISDKGLLAIAKSCPNLTELTIESCAN---------------------------IG 257
I+D L ++A+ C NLT+L + C + +
Sbjct: 125 SKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVS 184
Query: 258 NDGLQAIGQCCNNLKSISIKDCPVVGDQGIASL 290
++ LQAIG+ CN L+S+++ C + D G+ SL
Sbjct: 185 DNTLQAIGENCNQLQSLNLGWCENISDDGVMSL 217
>AT4G07400.1 | Symbols: VFB3 | VFB3 (VIER F-BOX PROTEINE 3);
ubiquitin-protein ligase | chr4:4197847-4199511 REVERSE
Length = 554
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 32/170 (18%)
Query: 144 LEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSL--WNL 201
LE + +D+GL A+ S G+ L + + T+VGL +A C LR L + W
Sbjct: 299 LERIQMSDLGLTAL----SKCSGVEVLHLVKTPDCTNVGLALVAERCKLLRKLHIDGWKT 354
Query: 202 PSVGNEGLFEIA-------------------------NGCHMLEKLDLCGCPAISDKGLL 236
+G+EGL +A + C LE+L LCG + D L
Sbjct: 355 NRIGDEGLIVVAKYCWNLQELVLIGVNPTKLSLEAIVSNCLNLERLALCGSDTVGDTELC 414
Query: 237 AIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQG 286
IA+ C L +L I++C I +DG++A+G C NL + +K C V QG
Sbjct: 415 CIAEKCLALRKLCIKNCP-ITDDGIKALGNGCPNLLKVKVKKCRGVTTQG 463
>AT3G58530.1 | Symbols: | F-box family protein-related |
chr3:21645759-21648219 FORWARD
Length = 353
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 166 GLGKLSIRGSRGVTSVGLRAIARGCPSLRALSL-WNLPSVGNEGLFEIANGCHMLEKLDL 224
L L++ + ++ G+ AI CP L+ S+ WN+ V + G+ + C + L+L
Sbjct: 112 SLEWLNLNVCQKISDNGIEAITSICPKLKVFSIYWNV-RVTDAGIRNLVKNCRHITDLNL 170
Query: 225 CGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISI 276
GC +++DK + +A+S P+L L I C I +DGL + Q C +L+++++
Sbjct: 171 SGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNL 222
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 167 LGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCG 226
+ L++ G + +T ++ +A P L +L++ + ++GL ++ C L+ L+L
Sbjct: 165 ITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYA 224
Query: 227 CPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQG 286
+DK + I+ +L L I NI ++G+ I + CN L+S+++ C + D G
Sbjct: 225 LSGFTDKAYMKISL-LADLRFLDICGAQNISDEGIGHIAK-CNKLESLNLTWCVRITDAG 282
Query: 287 IASLVSSAT 295
+ ++ +S T
Sbjct: 283 VNTIANSCT 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 83/172 (48%), Gaps = 12/172 (6%)
Query: 145 EGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCP----SLRALSLWN 200
E A D LAA+++ + + +++ ++GV L+ + CP SL L+L
Sbjct: 63 EMTNAGDRLLAALSLPRYRQ--VKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNV 120
Query: 201 LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDG 260
+ + G+ I + C L+ + ++D G+ + K+C ++T+L + C ++ +
Sbjct: 121 CQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKS 180
Query: 261 LQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLAKLKLQSLNITDVS 312
+Q + + +L+S++I C + D G+ ++ LQ+LN+ +S
Sbjct: 181 MQLVAESYPDLESLNITRCVKITDDGLLQVLQKC------FSLQTLNLYALS 226
>AT5G57900.1 | Symbols: SKIP1 | SKIP1 (SKP1 INTERACTING PARTNER 1);
protein binding | chr5:23449916-23450915 REVERSE
Length = 300
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 131 DLEIEDDGYLS----RSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAI 186
DLE D Y S E ++ D+ L ++ S GGL K+ +R + L
Sbjct: 53 DLEPWFDSYPESTHLWSPEFEQKVDLMLRSVV--DWSEGGLTKIRVRH---CSDHALSYA 107
Query: 187 ARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLT 246
A CP+L+ L++ + P+V + + +IA C L++LD+ C IS L+ I ++CPNL
Sbjct: 108 ADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLR 167
Query: 247 EL------------------TIESCANIGNDGLQAIGQCCNNLKSISIK 277
L +++C G+ AIG+ NL+ + I+
Sbjct: 168 ILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQ 216
>AT5G67250.1 | Symbols: SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTING
PROTEIN 2); ubiquitin-protein ligase |
chr5:26831677-26833260 REVERSE
Length = 527
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 23/254 (9%)
Query: 70 LPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDEL---CSKKTTQLLNESAEKN 126
LPDECL +F+ L G+ R C+ V KRWL L+ SR L + + L +
Sbjct: 46 LPDECLAHVFQFLGAGD-RKRCSLVCKRWL-LVDGQSRHRLSLDAKDEISSFLTSMFNRF 103
Query: 127 GEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAI 186
L + D +K+ + A+A+ + L ++ +RG R +T +G+
Sbjct: 104 DSVTKLALRCD---------RKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDF 154
Query: 187 ARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLD---LCGCPAISDKGLLAIAKSCP 243
A+ C +L+ LS+ + + G +G+ + C +LE+L L G ++ L S
Sbjct: 155 AKNCKNLKKLSVGSC-NFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSS 213
Query: 244 NLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGD-QGIASLVSSATCVLAKLK 302
+L + ++ N + + LK++ I C +GD + ++++ L+++
Sbjct: 214 SLRSICLKELVN--GQVFEPLLATTRTLKTLKIIRC--LGDWDKVLQMIANGKSSLSEIH 269
Query: 303 LQSLNITDVSLAVI 316
L+ L ++D+ L+ I
Sbjct: 270 LERLQVSDIGLSAI 283
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 144 LEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSL--WNL 201
LE + +DIGL+AI S + L I + ++ GL +A C LR L + W
Sbjct: 270 LERLQVSDIGLSAI----SKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRT 325
Query: 202 PSVGNEGLFEIANGC--------------HM-----------LEKLDLCGCPAISDKGLL 236
+G+EGL +A C HM LE+L LCG I D +
Sbjct: 326 NRIGDEGLLSVAKHCLNLQELVLIGVNATHMSLAAIASNCEKLERLALCGSGTIGDTEIA 385
Query: 237 AIAKSCPNLTELTIESCANIGNDGLQAIGQCCNN 270
IA+ C L + I+ C + + G++A+ C N
Sbjct: 386 CIARKCGALRKFCIKGCP-VSDRGIEALAVGCPN 418
>AT3G07550.2 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 395
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 105/251 (41%), Gaps = 55/251 (21%)
Query: 60 EQKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLL 119
+ + SI LPD+CL IF+RL + + RWL + N+SR L + + +L
Sbjct: 8 DNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNI-QNISRRSLQFQCSFSVL 66
Query: 120 NESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVT 179
N S+ + +L R L + L LS+ G
Sbjct: 67 NPSSLSQTNPD----VSSHHLHRLLTRFQ-----------------WLEHLSLSG----- 100
Query: 180 SVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIA 239
C L SL +L G L L L C ISD G+ IA
Sbjct: 101 ----------CTVLNDSSLDSLRYPGAR-----------LHTLYLDCCFGISDDGISTIA 139
Query: 240 KSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLA 299
CPNL+ +++ C NI + GL+ + + +LK +++ CP+V D GI +L S C
Sbjct: 140 SFCPNLSVVSLYRC-NISDIGLETLARASLSLKCVNLSYCPLVSDFGIKAL--SQAC--- 193
Query: 300 KLKLQSLNITD 310
L+L+S+ I++
Sbjct: 194 -LQLESVKISN 203
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 204 VGNEGLFEIANG-CHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQ 262
+ +GL I +G L L+L C + D+ + AIAK CP L E + C + G +
Sbjct: 255 IRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWE 314
Query: 263 AIGQCCNNLKSISIKDCPVVGDQGIASL 290
A+G+ C NLK + + C + DQG+ +L
Sbjct: 315 AVGKWCRNLKKLHVNRCRNLCDQGLLAL 342
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 182 GLRAIARGCPS-LRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAK 240
GL I G S LR L+L +VG+E + IA GC +L++ +L C + G A+ K
Sbjct: 259 GLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWEAVGK 318
Query: 241 SCPNLTELTIESCANIGNDGLQAIGQCCNNLK 272
C NL +L + C N+ + GL A+ C NL+
Sbjct: 319 WCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQ 350
>AT3G07550.1 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 395
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 105/251 (41%), Gaps = 55/251 (21%)
Query: 60 EQKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLL 119
+ + SI LPD+CL IF+RL + + RWL + N+SR L + + +L
Sbjct: 8 DNNVETSIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNI-QNISRRSLQFQCSFSVL 66
Query: 120 NESAEKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVT 179
N S+ + +L R L + L LS+ G
Sbjct: 67 NPSSLSQTNPD----VSSHHLHRLLTRFQ-----------------WLEHLSLSG----- 100
Query: 180 SVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIA 239
C L SL +L G L L L C ISD G+ IA
Sbjct: 101 ----------CTVLNDSSLDSLRYPGAR-----------LHTLYLDCCFGISDDGISTIA 139
Query: 240 KSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCVLA 299
CPNL+ +++ C NI + GL+ + + +LK +++ CP+V D GI +L S C
Sbjct: 140 SFCPNLSVVSLYRC-NISDIGLETLARASLSLKCVNLSYCPLVSDFGIKAL--SQAC--- 193
Query: 300 KLKLQSLNITD 310
L+L+S+ I++
Sbjct: 194 -LQLESVKISN 203
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 204 VGNEGLFEIANG-CHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDGLQ 262
+ +GL I +G L L+L C + D+ + AIAK CP L E + C + G +
Sbjct: 255 IRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWE 314
Query: 263 AIGQCCNNLKSISIKDCPVVGDQGIASL 290
A+G+ C NLK + + C + DQG+ +L
Sbjct: 315 AVGKWCRNLKKLHVNRCRNLCDQGLLAL 342
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 182 GLRAIARGCPS-LRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAK 240
GL I G S LR L+L +VG+E + IA GC +L++ +L C + G A+ K
Sbjct: 259 GLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWEAVGK 318
Query: 241 SCPNLTELTIESCANIGNDGLQAIGQCCNNLK 272
C NL +L + C N+ + GL A+ C NL+
Sbjct: 319 WCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQ 350
>AT2G06040.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 10 growth stages; CONTAINS
InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G21900.1); Has 3642 Blast hits to 1885 proteins
in 175 species: Archae - 0; Bacteria - 109; Metazoa -
2066; Fungi - 492; Plants - 697; Viruses - 0; Other
Eukaryotes - 278 (source: NCBI BLink). |
chr2:2352333-2355419 REVERSE
Length = 762
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 5/159 (3%)
Query: 162 SSRG-GLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLE 220
++RG L +L + SR ++ ++ I+ CP+L L L N+ + + L +ANGC LE
Sbjct: 585 TARGQTLKQLILTNSRKLSDSSIKVISENCPNLSVLDLANVCKLTDSSLGYLANGCQALE 644
Query: 221 KLDLCGCPAISDKGLLAIAKSC-PNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDC 279
KL C P SD+ + A ++ +L EL++ + +G++ A+ + + L+ + I C
Sbjct: 645 KLIFCRNP-FSDEAVAAFVETAGGSLKELSLNNVKKVGHNTALALAKHSDKLQILDISWC 703
Query: 280 PVVGDQGIASLVSSATCVLAKLKLQSLNITDVSLAVIGH 318
+ + + +V +++ + +TDV V GH
Sbjct: 704 REMSNDLLGYIVDNSSSLKVLKVFGCSQVTDV--FVKGH 740
>AT4G30640.1 | Symbols: | F-box family protein (FBL19) |
chr4:14952670-14953682 FORWARD
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 82/214 (38%), Gaps = 46/214 (21%)
Query: 70 LPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLLNESAEKNGEA 129
L ECL +IF RL + VSK W+ + + + + +T + L+ N
Sbjct: 23 LTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLET-RFLSFPESINWWT 81
Query: 130 EDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARG 189
+ E + D +L +V S GGL ++ IR T L A
Sbjct: 82 PEFEDKVDSFLR----------------SVVDRSEGGLTEIRIRH---CTERSLSYAAER 122
Query: 190 CPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELT 249
CP+L L + N CP ++D + IA +CPNL EL
Sbjct: 123 CPNLEVLWIKN--------------------------CPNVTDASMEKIAMNCPNLRELD 156
Query: 250 IESCANIGNDGLQAIGQCCNNLKSISIKDCPVVG 283
I I ++ L +G+ C NLK + P +G
Sbjct: 157 ISYSYGITHESLITLGRSCQNLKILKRNLLPRLG 190
>AT1G80630.1 | Symbols: | leucine-rich repeat family protein |
chr1:30308879-30310615 REVERSE
Length = 578
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 150 TDIGLAAIAVGTSS-RGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEG 208
T+ G+ T + G+ L + + + L I+R CP + +L + P + +G
Sbjct: 355 TNFGVEEYTKDTKDFKSGVKFLYLSRNHNLLDECLEKISRHCPFIESLDVAQCPGITRDG 414
Query: 209 LFEIANGCHMLEKLDLCGCPAI-----------------------SDKGLLAIAKSCPNL 245
+ E+ C L LD+ C I D+ L I+K C L
Sbjct: 415 ILEVWRNCGKLRSLDISRCTGIKSLGVVDFELPKLESLRACGTWIDDEALDMISKKCRGL 474
Query: 246 TELTIESCANIGNDGLQAIGQCCNNLKSISIKDC 279
L ++ C N+ + G++ + Q C L+ I++K C
Sbjct: 475 LHLDLQGCLNVSSRGVKEVVQSCIRLREINLKYC 508
>AT4G33210.1 | Symbols: | F-box family protein (FBL15) |
chr4:16015971-16020697 REVERSE
Length = 942
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 178 VTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLA 237
+T + ++ CP LR+LSL + + C +L+ LD+ C + D + +
Sbjct: 333 ITKCRVMRLSIRCPQLRSLSL------KRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRS 386
Query: 238 IAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV 297
A SCP L L + +C+ + ++ L+ I Q C NL ++ CP + SL S +
Sbjct: 387 AAISCPQLESLDVSNCSCVSDETLREIAQACANLHILNASYCPNI------SLESVHLPM 440
Query: 298 LAKLKLQSLN-ITDVSLAVIGH 318
L LKL S IT S+ I +
Sbjct: 441 LTVLKLHSCEGITSASMTWIAN 462
>AT3G50080.1 | Symbols: VFB2 | VFB2 (VIER F-BOX PROTEINE 2);
ubiquitin-protein ligase | chr3:18572788-18574356
FORWARD
Length = 522
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 59 FEQKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQL 118
FE LPD+CL IF+ L G+ R C+ VSKRWL L+ +R L +++
Sbjct: 33 FEDGDYDFTANLPDDCLAHIFQFLSAGD-RKRCSLVSKRWL-LVDGQNRHRLSLDAKSEI 90
Query: 119 LNESA---EKNGEAEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRGS 175
L + L + D RS +D L +++ S+ L ++ +RG
Sbjct: 91 LPFLPCIFNRFDSVTKLALRCD---RRSFS---LSDEALFIVSIRCSN---LIRVKLRGC 141
Query: 176 RGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDL 224
R +T +G+ + AR C SLR LS + + G +G+ + C +LE+L L
Sbjct: 142 REITDLGMESFARNCKSLRKLSCGSC-TFGAKGINAMLEHCKVLEELSL 189
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 144 LEGKKATDIGLAAIAVGTSSRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSL--WNL 201
LE + TDIGL G S L L I + +++GL ++ C LR L + W +
Sbjct: 264 LERLQVTDIGL----FGISKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWRV 319
Query: 202 PSVGNEGLFE-------------------------IANGCHMLEKLDLCGCPAISDKGLL 236
+G++GL IA+ C LE+L LCG I D +
Sbjct: 320 KRIGDQGLMSVAKHCLNLQELVLIGVDATYMSLSAIASNCKKLERLALCGSGTIGDAEIG 379
Query: 237 AIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVV 282
IA+ C L + I+ C I + G+QA+ C L + +K C +V
Sbjct: 380 CIAEKCVTLRKFCIKGCL-ISDVGVQALALGCPKLVKLKVKKCSLV 424
>AT5G07670.1 | Symbols: | F-box family protein |
chr5:2430421-2432065 FORWARD
Length = 476
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 178 VTSVGLRAIARGCPSLRALSLWNLPSVGNEGLF----EIANGCHMLEKLDLCGCPAISDK 233
V+ +GL +A+GC L L L VG EG F EI C MLE+L +C +
Sbjct: 249 VSDIGLMILAQGCKRLVKLEL-----VGCEGGFDGIKEIGECCQMLEELTVCDNKM--ES 301
Query: 234 GLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASL 290
G L + C NL L + SC I ND +++ CC L+ + ++ C + + +L
Sbjct: 302 GWLGGLRYCENLKTLKLVSCKKIDNDPDESLSCCCPALERLQLEKCQLRDKNTVKAL 358
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 39/241 (16%)
Query: 69 VLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSRDELCSKKTTQLLNESAEKNGE 128
+LPD L + +++P + R + V KRW L + R K + S
Sbjct: 64 LLPDLILIRVIQKIPNSQ-RKNLSLVCKRWFRLHGRLVRS---FKVSDWEFLSSGRLISR 119
Query: 129 AEDLEIED--DGYLSRSLEGKKATDIGLAAIAVGTSSRGGLGKLSIRG-SRGVTSVGLRA 185
+LE D G L + + + VG S S + GL+A
Sbjct: 120 FPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLSVELVERGLKA 179
Query: 186 IARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCP----------------- 228
+A GC +LR L + N +G L +A C L++L+L C
Sbjct: 180 LAGGCSNLRKLVVTNTSELG---LLNVAEECSRLQELELHKCSDSVLLGIGAFENLQILR 236
Query: 229 -----------AISDKGLLAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIK 277
+SD GL+ +A+ C L +L + C G DG++ IG+CC L+ +++
Sbjct: 237 LVGNVDGLYNSLVSDIGLMILAQGCKRLVKLELVGCEG-GFDGIKEIGECCQMLEELTVC 295
Query: 278 D 278
D
Sbjct: 296 D 296
>AT5G67140.1 | Symbols: | F-box family protein |
chr5:26794009-26795213 REVERSE
Length = 228
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 63 KQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWL-ALLSNMSRDELCSKKTTQLLNE 121
++A+I+ LP + L IF + + V K+W A+ +M+R E S ++ ++
Sbjct: 3 EEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDD 62
Query: 122 SAEKNGE-AEDLEIEDDGYLSRSLEGKKATDIGLAAIAVGTSSR--GGLGKLSIRGSRGV 178
S + A +L+ D +SRS G TD GL IA S+R L +S+ G +
Sbjct: 63 STSRLVHLAFNLKELD---ISRSRWGCHITDNGLYQIA---SARCVSNLNSVSLWGMTAI 116
Query: 179 TSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAI 238
T G+ + SL+ L++ + +E LF IA CH L+ + + C ++++GLL +
Sbjct: 117 TDSGVVQLISRTSSLQHLNI-GGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVL 175
Query: 239 AKSCPNLTELTI 250
C L + +
Sbjct: 176 VNKCRKLESINL 187
>AT1G55590.1 | Symbols: | F-box family protein |
chr1:20769476-20771756 REVERSE
Length = 607
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 176 RGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGL 235
+ + +G+ ++ C L ++ L P V + G + + C L+K ++ G +SD
Sbjct: 296 KRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAF 355
Query: 236 LAIAKSCPNLTELTIESCANIGNDGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSAT 295
+ S +L E+ + +C I ++ ++ +G C NL+ + + C + D + S+ SA
Sbjct: 356 HDVTGSSCSLQEVRLSTCPLITSEAVKKLG-LCGNLEVLDLGSCKSISDSCLNSV--SAL 412
Query: 296 CVLAKLKLQSLNITDVSLAVIG 317
L L L ++TD + +G
Sbjct: 413 RKLTSLNLAGADVTDSGMLALG 434
>AT1G80570.1 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 148 KATDIGLAAIAVGTSSRGGLGKLSIRGSRG-------VTSVGLRAIARGCPSLRALSLWN 200
+ TD L+AIA S L I S G T G+ + + CP +R LSL +
Sbjct: 311 RLTDESLSAIAQHCSK---LESFKISFSDGEFPSLFSFTLQGIITLIQKCP-VRELSLDH 366
Query: 201 LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDG 260
+ + G+ E LE L+L C +SD+GL+ +++ P+L L + C + +DG
Sbjct: 367 VCVFNDMGM-EALCSAQKLEILELVHCQEVSDEGLILVSQF-PSLNVLKLSKCLGVTDDG 424
Query: 261 LQA-IGQCCNNLKSISIKDCPVVGDQGIASLVSSAT 295
++ +G + L+ + ++DCP V +G+ +S +
Sbjct: 425 MRPLVGS--HKLELLVVEDCPQVSRRGVHGAATSVS 458
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 72/324 (22%)
Query: 67 IEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSR-------------DELCS- 112
++ LPD +++I +L ++R++ + KR+ +L N R D L S
Sbjct: 1 MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSL-DNEQRYSLRIGCGLVPASDALLSL 59
Query: 113 -KKTTQLLNESAEKNGEAEDL--EIEDDGYLSRSLEGKKATDIGLAAIAVGT-------S 162
++ L +G L +++D G L + TD+ L+ T S
Sbjct: 60 CRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLS 119
Query: 163 SRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKL 222
S L L + + +T G+ ++A GC LR L L +V + E LE+L
Sbjct: 120 SCPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEEL 179
Query: 223 DLCGCPAISDKGLLAIAKSCPNLTELTIESCAN--------------------------- 255
+ C AI + L+ + S LT L E AN
Sbjct: 180 CIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVE 239
Query: 256 --IGN------DGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV---------- 297
+GN GL + + C NL+ + + C V D I +LV A+ +
Sbjct: 240 LSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSD 299
Query: 298 --LAKLKLQSLNITDVSLAVIGHY 319
L L +L +TD SL+ I +
Sbjct: 300 FTLPLLNNITLRLTDESLSAIAQH 323
>AT1G80570.3 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 148 KATDIGLAAIAVGTSSRGGLGKLSIRGSRG-------VTSVGLRAIARGCPSLRALSLWN 200
+ TD L+AIA S L I S G T G+ + + CP +R LSL +
Sbjct: 311 RLTDESLSAIAQHCSK---LESFKISFSDGEFPSLFSFTLQGIITLIQKCP-VRELSLDH 366
Query: 201 LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDG 260
+ + G+ E LE L+L C +SD+GL+ +++ P+L L + C + +DG
Sbjct: 367 VCVFNDMGM-EALCSAQKLEILELVHCQEVSDEGLILVSQF-PSLNVLKLSKCLGVTDDG 424
Query: 261 LQA-IGQCCNNLKSISIKDCPVVGDQGIASLVSSAT 295
++ +G + L+ + ++DCP V +G+ +S +
Sbjct: 425 MRPLVGS--HKLELLVVEDCPQVSRRGVHGAATSVS 458
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 72/324 (22%)
Query: 67 IEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSR-------------DELCS- 112
++ LPD +++I +L ++R++ + KR+ +L N R D L S
Sbjct: 1 MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSL-DNEQRYSLRIGCGLVPASDALLSL 59
Query: 113 -KKTTQLLNESAEKNGEAEDL--EIEDDGYLSRSLEGKKATDIGLAAIAVGT-------S 162
++ L +G L +++D G L + TD+ L+ T S
Sbjct: 60 CRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLS 119
Query: 163 SRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKL 222
S L L + + +T G+ ++A GC LR L L +V + E LE+L
Sbjct: 120 SCPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEEL 179
Query: 223 DLCGCPAISDKGLLAIAKSCPNLTELTIESCAN--------------------------- 255
+ C AI + L+ + S LT L E AN
Sbjct: 180 CIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVE 239
Query: 256 --IGN------DGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV---------- 297
+GN GL + + C NL+ + + C V D I +LV A+ +
Sbjct: 240 LSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSD 299
Query: 298 --LAKLKLQSLNITDVSLAVIGHY 319
L L +L +TD SL+ I +
Sbjct: 300 FTLPLLNNITLRLTDESLSAIAQH 323
>AT1G80570.2 | Symbols: | F-box family protein (FBL14) |
chr1:30290661-30292231 FORWARD
Length = 480
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 72/324 (22%)
Query: 67 IEVLPDECLFEIFRRLPGGEERSACACVSKRWLALLSNMSR-------------DELCS- 112
++ LPD +++I +L ++R++ + KR+ +L N R D L S
Sbjct: 14 MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSL-DNEQRYSLRIGCGLVPASDALLSL 72
Query: 113 -KKTTQLLNESAEKNGEAEDL--EIEDDGYLSRSLEGKKATDIGLAAIAVGT-------S 162
++ L +G L +++D G L + TD+ L+ T S
Sbjct: 73 CRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLS 132
Query: 163 SRGGLGKLSIRGSRGVTSVGLRAIARGCPSLRALSLWNLPSVGNEGLFEIANGCHMLEKL 222
S L L + + +T G+ ++A GC LR L L +V + E LE+L
Sbjct: 133 SCPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEEL 192
Query: 223 DLCGCPAISDKGLLAIAKSCPNLTELTIESCAN--------------------------- 255
+ C AI + L+ + S LT L E AN
Sbjct: 193 CIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVE 252
Query: 256 --IGN------DGLQAIGQCCNNLKSISIKDCPVVGDQGIASLVSSATCV---------- 297
+GN GL + + C NL+ + + C V D I +LV A+ +
Sbjct: 253 LSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSD 312
Query: 298 --LAKLKLQSLNITDVSLAVIGHY 319
L L +L +TD SL+ I +
Sbjct: 313 FTLPLLNNITLRLTDESLSAIAQH 336
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 148 KATDIGLAAIAVGTSSRGGLGKLSIRGSRG-------VTSVGLRAIARGCPSLRALSLWN 200
+ TD L+AIA S L I S G T G+ + + CP +R LSL +
Sbjct: 324 RLTDESLSAIAQHCSK---LESFKISFSDGEFPSLFSFTLQGIITLIQKCP-VRELSLDH 379
Query: 201 LPSVGNEGLFEIANGCHMLEKLDLCGCPAISDKGLLAIAKSCPNLTELTIESCANIGNDG 260
+ + G+ E LE L+L C +SD+GL+ +++ P+L L + C + +DG
Sbjct: 380 VCVFNDMGM-EALCSAQKLEILELVHCQEVSDEGLILVSQF-PSLNVLKLSKCLGVTDDG 437
Query: 261 LQA-IGQCCNNLKSISIKDCPVVGDQGIASLVSSAT 295
++ +G + L+ + ++DCP V +G+ +S +
Sbjct: 438 MRPLVGS--HKLELLVVEDCPQVSRRGVHGAATSVS 471