Jatropha Genome Database

JcCA0152411.20

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.20 + phase: 0 
         (209 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62580.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   320   3e-88
AT1G72100.1 | Symbols:  | late embryogenesis abundant domain-con...    62   4e-10
AT1G22600.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   1e-06

>AT3G62580.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein (TAIR:AT1G72100.1); Has 237 Blast hits to 236
           proteins in 85 species: Archae - 0; Bacteria - 4;
           Metazoa - 103; Fungi - 69; Plants - 61; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr3:23146931-23147735 FORWARD
          Length = 213

 Score =  320 bits (821), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/213 (73%), Positives = 175/213 (82%), Gaps = 4/213 (1%)

Query: 1   MGWLTRFLAAVAFLAIGVIFSPETFGS----KSVSQLSTYLKLAHLLSFSTAFGAALWVT 56
           MGW T FL  VA LA+GVIFSPETFGS    ++ +++S +LKLAHLLSF+TA+GAALW T
Sbjct: 1   MGWYTSFLVVVASLAVGVIFSPETFGSLTNGENSAKISIFLKLAHLLSFATAWGAALWAT 60

Query: 57  FIGGIIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCATSVGSFGYLHPWKSASTAEKYQLG 116
           FIGGIIMFKNLPRHQFGNLQSK+FPAYF LVG CCA S+ +FGYLHPWKS+ST EKYQ+G
Sbjct: 61  FIGGIIMFKNLPRHQFGNLQSKLFPAYFTLVGSCCAISLSAFGYLHPWKSSSTVEKYQIG 120

Query: 117 XXXXXXXXXXXXXXVFTPMTIEMMRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNK 176
                         VFTPMTI+MM+QRHKVERE NIG EVGWSKN+E AK+ PKLAAMNK
Sbjct: 121 FLLSAFAFNLTNLFVFTPMTIDMMKQRHKVERENNIGDEVGWSKNREKAKSIPKLAAMNK 180

Query: 177 KFGMIHGFSSLANIMSFGGLAMHSWYLAGKLNL 209
           KFGMIHG SSLANI SFG LAMHSWYLAGKLNL
Sbjct: 181 KFGMIHGLSSLANIFSFGSLAMHSWYLAGKLNL 213


>AT1G72100.1 | Symbols:  | late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein | chr1:27127250-27128811 FORWARD
          Length = 480

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 25  FGSKSVSQLS--TYLKLAHLLSFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPA 82
           FGS + + LS      +  L   + AFG ++WVTF+   ++   L R QFG +QSK++P 
Sbjct: 296 FGSATAATLSPTKVASIVGLTGIAAAFGTSVWVTFVSSYVLASVLGRQQFGVVQSKLYPV 355

Query: 83  YFWLVGVCCATSVGSFGYLHPWKS---ASTAEKYQLGXXXXXXXXXXXXXXVFTPMTIEM 139
           YF    V     VG FG++   +        E +Q                   P   + 
Sbjct: 356 YFKATSVGIL--VGLFGHVLSRRRKLLTDATEMWQGVNLLSSFFMIEANKSFVEPRATKA 413

Query: 140 MRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNKKFGMIHGFSSLANIMSFGGLAMH 199
           M +R K E+EE  G E   +  QE  +   KL  ++++   ++ +SS  NI++   L  H
Sbjct: 414 MFERMKAEKEEGRGGE--RTSEQELRR---KLEQLSERLSKLNTYSSWLNILTLMSLTWH 468

Query: 200 SWYLAGKL 207
             YL  +L
Sbjct: 469 FVYLGQRL 476


>AT1G22600.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: stem, sperm cell,
           embryo, hypocotyl, flower; EXPRESSED DURING: petal
           differentiation and expansion stage, D bilateral stage;
           BEST Arabidopsis thaliana protein match is: late
           embryogenesis abundant domain-containing protein / LEA
           domain-containing protein (TAIR:AT1G72100.1); Has 126
           Blast hits to 123 proteins in 31 species: Archae - 0;
           Bacteria - 0; Metazoa - 63; Fungi - 8; Plants - 55;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7987308-7989187 REVERSE
          Length = 385

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 42  LLSFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFWLVGV 89
           ++  + A+G  +WVTF+ G ++   L   QFG +QSKM+P YF  V V
Sbjct: 198 IVGIAAAYGMCVWVTFVSGYVLASVLGEQQFGVVQSKMYPVYFKAVSV 245