Jatropha Genome Database

JcCA0152411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.10 - phase: 0 /partial
         (958 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02110.1 | Symbols:  | transcription coactivator | chr4:93519...   343   4e-94
AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    69   1e-11
AT1G77320.1 | Symbols: MEI1 | MEI1 (meiosis defective 1); transc...    62   2e-09

>AT4G02110.1 | Symbols:  | transcription coactivator |
           chr4:935191-940191 FORWARD
          Length = 1329

 Score =  343 bits (879), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 148/216 (68%), Positives = 183/216 (84%)

Query: 3   DSNSPSKTFLGVRFVLFGFDSIHERQVRAKLLNGGGVDAGQYSQSCSHLIVDKIVYDDPL 62
           DS  P KT+ GV+F L GF+ IH   +R+KL++GGGVD GQ++QSC+HLIVDK++YDDP+
Sbjct: 4   DSGLPPKTYSGVKFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIVDKLLYDDPI 63

Query: 63  CVAARNDGKTLVTALWVDHSCDIGMAVDATSIMYRPPRDLNGIPGAKHLIMCLTGYQRQD 122
           CVAARN GK +VT  WVDHS DIGM  +A SI+YRP RDLNGIPG+K L++CLTGYQ  D
Sbjct: 64  CVAARNSGKVVVTGSWVDHSFDIGMLDNANSILYRPLRDLNGIPGSKALVVCLTGYQGHD 123

Query: 123 RDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLEDCLRD 182
           R+DIM MV LMG QFSKPLVAN+VTHLICYKFEGEKYELA ++K+IKLVNHRWLEDCL++
Sbjct: 124 REDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRIKLVNHRWLEDCLKN 183

Query: 183 WELLPEDNYNKSGYEMEMMEAEAKDSEEDVEDITVK 218
           W+LLPE +Y  SGYE+++MEA A+DSE++ ED +VK
Sbjct: 184 WKLLPEVDYEISGYELDIMEASARDSEDEAEDASVK 219



 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 1/106 (0%)

Query: 850  KTMVKSDKVSLKVKQKSWKNNPNCTPVREVSKQVKTEPVWFILSGHKLQRKEFQQVIRRL 909
            K + KS K   K +++S +   N    R+V +  + EP +FI+SG + QR E+QQ+IRRL
Sbjct: 1060 KKVAKSAKTGTKAEKESKQLRVNPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRL 1119

Query: 910  KGKVCRDSHQWSYQATHFITPDPIRRTEKFFAAAASGRWILKTDYL 955
            KGK CRDSHQWSYQATHFI P+ IRRTEKFFAAAASG WILKTDY+
Sbjct: 1120 KGKCCRDSHQWSYQATHFIAPE-IRRTEKFFAAAASGSWILKTDYV 1164


>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein |
           chr1:25130099-25132169 FORWARD
          Length = 453

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 109 KHLIMCLTGYQRQDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKI 168
           ++++  ++GY   DR  ++ ++S  GA +   + +  +THL+C+KFEG+KY+LA K   +
Sbjct: 2   ENVVATVSGYHGSDRFKLIKLISHSGASYVGAM-SRSITHLVCWKFEGKKYDLAKKFGTV 60

Query: 169 KLVNHRWLEDCLRDWELLPEDNY 191
            +VNHRW+E+C+++   + E  Y
Sbjct: 61  -VVNHRWVEECVKEGRRVSETPY 82


>AT1G77320.1 | Symbols: MEI1 | MEI1 (meiosis defective 1);
           transcription coactivator | chr1:29056740-29062710
           FORWARD
          Length = 972

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 74  VTALWVDHSCDIGMAVDATS-IMYRPPRDLNGIPGAKHLIMCLTGYQRQDRDDIMTMVSL 132
           V++ WV +   +G  +  +S I+Y P      +PG + L +C + +  ++ + +  +  +
Sbjct: 629 VSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVV 688

Query: 133 MGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLEDCLRDWELLPEDNYN 192
           +GA F + L   KVTHLIC   +G+KY  ASK   I  V   WL +C+R  +++  DN++
Sbjct: 689 LGADFVERL-TRKVTHLICNFAKGDKYVRASKWGIIS-VTPDWLYECVRQNQVVCTDNFH 746