Jatropha Genome Database

JcCA0152031.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.30 + phase: 0 
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43822.1 | Symbols:  | unknown protein | chr5:17620830-176218...   181   2e-46

>AT5G43822.1 | Symbols:  | unknown protein | chr5:17620830-17621868
           FORWARD
          Length = 195

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 129/184 (70%), Gaps = 3/184 (1%)

Query: 1   MESIVKKYQQRFRKVREEMDKWDHLQSRLLSQFINASSIISRLQVIRDSNNYGNLSGVDG 60
           ME++++K+QQ+FRK +EEM+KW+ LQ R +S F NASSII RLQ +++  +YG L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IVDAVLRKQMDSLETILLSMNKTLEDFRSIVLFLEKMYKDGRQLVKGGPNQLTTKQLQQR 120
           I DAV+++QM  LE++L SM   +E+F   VL  EK+++DG QL +    + + +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLRE---IESSKRRVEER 117

Query: 121 VGVKPCLADCLDGLMILHDMHRSEYXXXXXXXXXXXXXXXXPSSGDLAALQQLMVDQPNI 180
           +GVKPC+ DCL+GL IL+DMH+SEY                PS GDL ALQ L+VDQPNI
Sbjct: 118 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPSPGDLNALQYLVVDQPNI 177

Query: 181 PKEE 184
           PK+E
Sbjct: 178 PKDE 181