Jatropha Genome Database

JcCA0152031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.20 - phase: 0 
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20770.1 | Symbols:  | unknown protein | chr1:7215345-7216648...   194   3e-50

>AT1G20770.1 | Symbols:  | unknown protein | chr1:7215345-7216648
           REVERSE
          Length = 215

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 136/191 (71%), Gaps = 10/191 (5%)

Query: 37  GDDNVLRFLDSMDSYLTLFDSLSHTLRQGWLELAGARHSMGASRINSALLDLKVHSASTL 96
           GD+NVL+FLDS+D YLTL DS++  LR+GW +LA ARHSMG  RINS LLDLK H AS+ 
Sbjct: 29  GDENVLQFLDSLDGYLTLMDSVNSKLREGWFDLASARHSMGTLRINSTLLDLKYHPASST 88

Query: 97  LQVSEGH-DSMEEQPHFILRKWGSLDCSR----YQNSKEGELQAKPGSPRLRQRGNSQVS 151
           LQV++   +S+   PHF L KW S   SR    +    + E+   P SP+LR RG   VS
Sbjct: 89  LQVTDQDVESLGSVPHFALSKWASKGGSRKGKDFSTDTDSEI-GSPLSPQLRHRG---VS 144

Query: 152 EEITSPK-QAALKVDDQVQKERSRSLSVFGTLVSPKLRDAQLSFETALETIVEIANMRSE 210
           EE  S K +  L  D++++KER++SLSVFG LVSPKLR AQ SFETALET+VEIANMR+ 
Sbjct: 145 EEKPSAKDETVLAADEEIKKERAKSLSVFGGLVSPKLRGAQQSFETALETLVEIANMRAS 204

Query: 211 MLSAFDGVNKE 221
           M+SAF+ + ++
Sbjct: 205 MISAFERITEK 215