Jatropha Genome Database

JcCA0151951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151951.20 - phase: 0 
         (260 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07710.1 | Symbols:  | exonuclease family protein | chr5:2453...   233   8e-62
AT5G61390.1 | Symbols:  | exonuclease family protein | chr5:2467...   227   5e-60
AT1G74390.1 | Symbols:  | exonuclease family protein | chr1:2796...   207   4e-54

>AT5G07710.1 | Symbols:  | exonuclease family protein |
           chr5:2453310-2455357 FORWARD
          Length = 468

 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 123/251 (49%), Positives = 171/251 (68%), Gaps = 16/251 (6%)

Query: 10  AQMDPFDMRTLSSEM-DINSLQQDVCMEENPLTESSEIPLIETSEIPPVTTEPEGSSGYV 68
           AQ DPF+M  L +EM   N +Q D+ MEE           IE S++       E +S + 
Sbjct: 229 AQPDPFNMSVLRNEMASDNHIQSDILMEEEQ---------IEPSDV----VASENTSDHE 275

Query: 69  EFLKPDDVSISSIRAKFVPFFRGSQ--KMLLLHKNFILQLNCPHLRVRFGLSTKFSDHAG 126
            FL PD +S+S+I+A   PF+ GSQ  K+ LLH +  LQL C +L++RFG++ KF D+ G
Sbjct: 276 GFLTPDAMSLSNIKAMLFPFYPGSQMMKLKLLHGDSPLQLYCSYLKIRFGVNGKFLDNTG 335

Query: 127 RPRLSFVVDASPSLCGVLDACDNIAQQSYGESGSSSDWRPVVNRKPGYLNYPTARMHIPT 186
           R RL+FVVD +PSL  +L+ACD+ AQ+   +SGS+S+W PVVN   G++NYP AR+HI T
Sbjct: 336 RRRLNFVVDLNPSLYSILEACDSNAQKLSVDSGSTSEWNPVVNPMKGFVNYPNARIHIAT 395

Query: 187 IVNGEVAQYATEIYQKDPSGTTQKLVFSRFDAAELDTWFSPGTHIDAYFSLDTYDYQQSA 246
            +NG+ A+YATEI+Q++ SG TQKL+FS  +  EL++  + G+ +DA+ SL+ YDYQQ A
Sbjct: 396 EINGDEARYATEIHQRESSGATQKLIFSNPNNEELESLLTTGSVVDAFLSLEPYDYQQKA 455

Query: 247 GIRLVAKKLFI 257
           GIRLVAKKL I
Sbjct: 456 GIRLVAKKLVI 466


>AT5G61390.1 | Symbols:  | exonuclease family protein |
           chr5:24678802-24680857 REVERSE
          Length = 487

 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 166/261 (63%), Gaps = 17/261 (6%)

Query: 1   MMTSFASDTAQMDPFDMRTLSSEMDINSLQQDVCMEENPLTESSEIPLIETSEIPPVTTE 60
           +++  +S  AQ DPFDM TL +E+    LQ DV MEE    +S              T  
Sbjct: 239 ILSFVSSAEAQTDPFDMSTLRNEIAPEVLQSDVPMEEEQNQQSE-------------TVA 285

Query: 61  PEGSSGYVEFLKPDDVSISSIRAKFVPFFRGSQ--KMLLLHKNFILQLNCPHLRVRFGLS 118
            EG+     F++ D +S+SSIRA  VP + GSQ  K+ L   +  LQL+CP L+VRFG++
Sbjct: 286 SEGTGDQEGFMELDKISVSSIRATHVPLYDGSQTMKLQLFLGDRPLQLHCPRLKVRFGIN 345

Query: 119 TKFSDHAGRPRLSFVVDASPSLCGVLDACDNIAQQSYGESGSSSDWRPVVNRKPGYLNYP 178
            KF D AGR RL+FV+D  PSLC VL  CD+ AQ    +SGS SDW P+V    G+LN P
Sbjct: 346 GKFMDKAGRRRLNFVIDLYPSLCNVLQECDSAAQTISVDSGSGSDWNPLVIPMKGFLNCP 405

Query: 179 TARMHIPTIVNGEVAQYATEIYQKDPSG--TTQKLVFSRFDAAELDTWFSPGTHIDAYFS 236
           TAR+HIPT +NG++ +YA EI+QK+ SG   TQKL+ S   A E+++  +P T +DA+ S
Sbjct: 406 TARIHIPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLNPRTVLDAFLS 465

Query: 237 LDTYDYQQSAGIRLVAKKLFI 257
           L+ YDYQQ AGIRLVA+KL I
Sbjct: 466 LEPYDYQQRAGIRLVARKLVI 486


>AT1G74390.1 | Symbols:  | exonuclease family protein |
           chr1:27961760-27963826 REVERSE
          Length = 506

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 148/246 (60%), Gaps = 12/246 (4%)

Query: 13  DPFDMRTLSSEMDINSLQQDVCMEENPLTESSEIPLIETSEIPPVTTEPEGSSGYVEFLK 72
           DP D+ TL  ++ I +LQ D   E   + +  E P             P+  +    FL 
Sbjct: 268 DPIDITTLIGKLRIGTLQTDAAEEAKTVRQQDESP-----------PSPDSDAKDESFLG 316

Query: 73  PDDVSISSIRAKFVPFFRGSQKMLLLHKNFILQLNCPHLRVRFGLSTKFSDHAGRPRLSF 132
            ++VS+SSIRA  VPF+RGS +M L H +  L L    L+VRFG+S KF DHAGRP+L+ 
Sbjct: 317 VNEVSVSSIRASLVPFYRGSLRMKLFHNDTPLHLCWHSLKVRFGISRKFVDHAGRPKLNI 376

Query: 133 VVDASPSLCGVLDACDNIAQQSYGESGSSSDWRPVVNRKPGYLNYPTARMHIPTIVNGEV 192
           +VDA   LC +LDA D  A     +S ++SDWRP V RK G+ NYPTAR+HI +  NG+ 
Sbjct: 377 IVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKEGFANYPTARLHISSESNGDD 436

Query: 193 AQYATEIYQK-DPSGTTQKLVFSRFDAAELDTWFSPGTHIDAYFSLDTYDYQQSAGIRLV 251
               T++YQK +P GT QKL  S  +  +L++   PGT +DA+FSL+ Y YQQ AGIRL 
Sbjct: 437 TLCGTQVYQKEEPLGTNQKLDVSSDNLEKLESALLPGTLVDAFFSLEPYSYQQMAGIRLA 496

Query: 252 AKKLFI 257
            KKL I
Sbjct: 497 VKKLVI 502