Jatropha Genome Database
- JcCA0151951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0151951.10 + phase: 0 /pseudo/partial
(349 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB E... 210 1e-54
AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL... 87 1e-17
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 84 1e-16
AT2G46670.1 | Symbols: | pseudo-response regulator, putative / ... 84 1e-16
AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 84 1e-16
AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS PSEUDO-R... 80 1e-15
AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-R... 77 2e-14
AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type) f... 60 3e-09
AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type) f... 59 6e-09
AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 57 1e-08
AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcript... 57 2e-08
AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1); tr... 57 2e-08
AT1G04500.1 | Symbols: | zinc finger CONSTANS-related | chr1:12... 57 2e-08
AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 56 3e-08
AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 56 4e-08
AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 55 6e-08
AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 55 6e-08
AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 55 8e-08
AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 55 8e-08
AT5G48250.1 | Symbols: | zinc finger (B-box type) family protei... 54 1e-07
AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2)... 54 1e-07
AT1G07050.1 | Symbols: | CONSTANS-like protein-related | chr1:2... 54 2e-07
AT1G73870.1 | Symbols: | zinc finger (B-box type) family protei... 53 3e-07
AT1G25440.1 | Symbols: | zinc finger (B-box type) family protei... 53 3e-07
AT1G49130.1 | Symbols: | zinc finger (B-box type) family protei... 53 3e-07
AT1G68520.1 | Symbols: | zinc finger (B-box type) family protei... 53 3e-07
AT1G49130.2 | Symbols: | zinc finger (B-box type) family protei... 52 4e-07
AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknow... 52 4e-07
AT1G51600.2 | Symbols: ZML2, TIFY2A | TIFY2A; sequence-specific ... 52 4e-07
AT1G51600.1 | Symbols: ZML2, TIFY2A | TIFY2A; sequence-specific ... 52 4e-07
AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 52 7e-07
AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 52 7e-07
AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 52 7e-07
AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 52 7e-07
AT3G21175.2 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); sequence-specif... 51 9e-07
AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 9e-07
AT3G21175.1 | Symbols: ZML1, TIFY2B | ZML1 (ZIM-LIKE 1); sequenc... 51 9e-07
AT3G21175.3 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); transcription f... 51 9e-07
AT2G47890.1 | Symbols: | zinc finger (B-box type) family protei... 49 5e-06
>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component
response regulator | chr5:24675540-24678176 FORWARD
Length = 618
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 167/281 (59%), Gaps = 38/281 (13%)
Query: 88 VTVEQPVNGT-QLHENGETRESYSQDEFCRS-SSVPDSISMERSCTPPMSREFPQKNSKD 145
V + +N T Q H + T + +SQ E ++ +S P S+ ERS T P S E +N ++
Sbjct: 357 VVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSL--ERSRTLPTSMESHGRNYQE 414
Query: 146 ESLSL---VLMHSRNDLQLDASGLSTQNVYPYYMSGVVNQVLMPSSAQLYQKNLHELQTN 202
++++ + S++ Q+D SG S N YPYYM GV+NQV+M S+A
Sbjct: 415 GNMNIPQVAMNRSKDSSQVDGSGFSAPNAYPYYMHGVMNQVMMQSAA------------- 461
Query: 203 VPSAIMPQYNH-LQQCSP-HVTGMASFPYY--PVNICLQPGQMP--------TAHSWPSF 250
+MPQY H + C P H GM +PYY P+N LQ QM HSW
Sbjct: 462 ----MMPQYGHQIPHCQPNHPNGMTGYPYYHHPMNTSLQHSQMSLQNGQMSMVHHSWSPA 517
Query: 251 GNSSSADVKINKVDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
GN S +V++NK+DRRE AL+KFR+KR +RCFDKKIRYVNRK+LAERRPRV+GQFVRK+N
Sbjct: 518 GNPPSNEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMN 577
Query: 311 GVNVDLNGQPSTX--XXXXXXXXXXXHASRDSSPEDDASGS 349
GVNVDLNGQP + +RDSSP+DDA G+
Sbjct: 578 GVNVDLNGQPDSADYDDEEEEEEEEEEENRDSSPQDDALGT 618
>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component
response regulator | chr5:638283-641461 REVERSE
Length = 727
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 261 NKVDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
NK+ +REAAL KFRQKRKERCF KK+RY +RKKLAE+RPRVRGQFVRK D
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDD 718
>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19232874-19234901 FORWARD
Length = 468
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 43/46 (93%)
Query: 265 RREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
+REAALMKFR KRK+RCFDKK+RY +RKKLAE+RPRV+GQFVR VN
Sbjct: 416 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 461
>AT2G46670.1 | Symbols: | pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative |
chr2:19164589-19165233 REVERSE
Length = 183
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 42/45 (93%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REAALMKFR KRK+RCFDKK+RY +RKKLAE+RPRV+GQFVR VN
Sbjct: 132 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 176
>AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19233422-19234901 FORWARD
Length = 351
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 42/45 (93%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REAALMKFR KRK+RCFDKK+RY +RKKLAE+RPRV+GQFVR VN
Sbjct: 300 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 344
>AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/
two-component response regulator |
chr5:24198215-24200502 REVERSE
Length = 495
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 14/138 (10%)
Query: 181 NQVLMPSSAQLYQKNLHELQTNVPSAIMPQYNHLQQCSPHVTGMASFPYYP---VNICLQ 237
N+ + S Q +K + V + ++++L S + G S P V C
Sbjct: 351 NREDLQSLEQTLKKTREDRDYKVGDRSVLRHSNLSAFSKYNNGATSAKKAPEENVESC-S 409
Query: 238 PGQMPTAHSWPSFGNSSSADVKINK----VDR---REAALMKFRQKRKERCFDKKIRYVN 290
P P A G+SSS+D + + DR REAALMKFR KRKERCF+KK+RY +
Sbjct: 410 PHDSPIA---KLLGSSSSSDNPLKQQSSGSDRWAQREAALMKFRLKRKERCFEKKVRYHS 466
Query: 291 RKKLAERRPRVRGQFVRK 308
RKKLAE+RP V+GQF+RK
Sbjct: 467 RKKLAEQRPHVKGQFIRK 484
>AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator | chr5:8356204-8358873
REVERSE
Length = 667
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 45/51 (88%)
Query: 259 KINKVDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKV 309
KI + +REAAL KFR KRK+RC++KK+RY +RKKLAE+RPR++GQFVR+V
Sbjct: 611 KIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQV 661
>AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 355
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVDL 316
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ N D+
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDI 335
>AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 406
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REA +M++R+KRK R F+K IRY +RK AE RPR++G+F ++ +
Sbjct: 339 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 383
>AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 394
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 39/49 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNV 314
REA+++++++KR+ R F KKIRY RK A++RPR++G+FVR+ N N+
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKGRFVRRPNARNL 389
>AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcription
factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 347
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA ++++R+K+K R FDK IRY +RK AE RPR++G+F ++
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320
>AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding |
chr5:5176297-5177473 REVERSE
Length = 355
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA ++++R+K+K R F+K IRY +RK AE+RPR++G+F +K
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
>AT1G04500.1 | Symbols: | zinc finger CONSTANS-related |
chr1:1221757-1224235 REVERSE
Length = 386
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 173 PYYMSGVVNQVLMPSSAQLYQKNLHELQTNVPSAIMPQYNHLQQCSPHVTGMASFPYYPV 232
P YM+ N + + Y N+H + S P ++ L + G+ F P+
Sbjct: 181 PTYMTVTGNMMNTGLGSGFYSGNIH-----LGSDFKPSHDQLMEIQADNGGL--FCPDPI 233
Query: 233 NICLQPG--------------QMPTAHSWPSFGNSSSA--DVKINKV-----DRREAALM 271
PG M P G + D NKV ++R+ +
Sbjct: 234 KPIFNPGDHHLQGLDGVENQNHMVAQPVLPQLGTEITGLDDPSFNKVGKLSAEQRKEKIH 293
Query: 272 KFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
++ +KR ER F KKI+Y RK LA+ RPRVRG+F +
Sbjct: 294 RYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 330
>AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567946 FORWARD
Length = 294
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ +
Sbjct: 229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170763
FORWARD
Length = 435
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REA+++++++KR+ R F KKIRY RK A++RPR++G+FVR+ N
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPN 427
>AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 373
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA ++++R+KRK R F+K IRY +RK AE RPRV G+F ++
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
>AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to
1506 proteins in 139 species: Archae - 0; Bacteria - 8;
Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0;
Other Eukaryotes - 318 (source: NCBI BLink). |
chr5:4632147-4633651 REVERSE
Length = 339
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA+L+++++KR+ R F K+IRY RK AE+RPRV+G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
>AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits
to 4734 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses -
0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 409
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 257 DVKINKV-----DRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVR 307
D +NKV ++R+ + ++ +KR ER F+KKI+Y RK LA+ RPRVRG+F +
Sbjct: 296 DSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 351
>AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits
to 4729 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses -
0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 257 DVKINKV-----DRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVR 307
D +NKV ++R+ + ++ +KR ER F+KKI+Y RK LA+ RPRVRG+F +
Sbjct: 297 DSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
>AT5G48250.1 | Symbols: | zinc finger (B-box type) family protein |
chr5:19561719-19563113 REVERSE
Length = 373
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
R A+M++++K+K R FDK++RYV+RK+ A+ R RV+G+FV+ + D
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYD 365
>AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2);
transcription activator | chr3:4099223-4100277 FORWARD
Length = 251
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
Query: 208 MPQYNHLQQ------CSPHVTGMASFPYYPVNICLQPGQMPTAHSWPSFGNSSSA----- 256
+P+YN+ Q + + G YY + ++P P A S+GNS
Sbjct: 69 VPEYNNYYQKMSVNNATHYFHGGDHQEYYGFSPEIKPLFRP-ATGEQSWGNSEGGIQAEP 127
Query: 257 DVKINK--VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVR 307
+ K+ + V+ R+ +M++ +K+ +R F+K I+YV RK LA+RR RVRG+F R
Sbjct: 128 NTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFAR 180
>AT1G07050.1 | Symbols: | CONSTANS-like protein-related |
chr1:2164327-2165133 REVERSE
Length = 195
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 265 RREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
RREA+++++++KR+ R F KKIRY RK A++RPR +G+FV++
Sbjct: 150 RREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>AT1G73870.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:27779214-27780522 FORWARD
Length = 392
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVN 310
REA ++++++KR+ R F KKIRY RK AE+RPR++G+FV++ +
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
>AT1G25440.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:8933939-8935284 REVERSE
Length = 417
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
>AT1G49130.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175936 REVERSE
Length = 326
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA + ++R KRK R F+KKIRY RK A++RPR++G+FVR+
Sbjct: 278 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
>AT1G68520.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:25709331-25710749 REVERSE
Length = 406
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399
>AT1G49130.2 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175811 REVERSE
Length = 319
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRK 308
REA + ++R KRK R F+KKIRY RK A++RPR++G+FVR+
Sbjct: 271 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 313
>AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
flower, root; EXPRESSED DURING: petal differentiation
and expansion stage; CONTAINS InterPro DOMAIN/s: CCT
domain (InterPro:IPR010402); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41380.1);
Has 907 Blast hits to 907 proteins in 64 species: Archae
- 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882;
Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
| chr1:23682529-23684050 REVERSE
Length = 293
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 251 GNSSSADVKINKVDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVR 307
G+ S V + R+ + K+R KR +R F K I+Y RK LA+ RPRVRG+F R
Sbjct: 177 GDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR 233
>AT1G51600.2 | Symbols: ZML2, TIFY2A | TIFY2A; sequence-specific DNA
binding / transcription factor/ zinc ion binding |
chr1:19133176-19135252 FORWARD
Length = 302
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFV 306
+ +R A+L++FR+KRK R FDKKIRY RK++A R R +GQF
Sbjct: 144 IPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFT 187
>AT1G51600.1 | Symbols: ZML2, TIFY2A | TIFY2A; sequence-specific DNA
binding / transcription factor/ zinc ion binding |
chr1:19133176-19135252 FORWARD
Length = 302
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFV 306
+ +R A+L++FR+KRK R FDKKIRY RK++A R R +GQF
Sbjct: 144 IPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFT 187
>AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
R A+M++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
R A+M++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
R A+M++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 266 REAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVD 315
R A+M++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>AT3G21175.2 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); sequence-specific
DNA binding / transcription factor/ zinc ion binding |
chr3:7422832-7424598 FORWARD
Length = 295
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFV 306
V +R A+L++FR+KRK R FDK IRY RK++A R R +GQF
Sbjct: 138 VPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 181
>AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G63820.1); Has 952 Blast hits to 949 proteins
in 72 species: Archae - 0; Bacteria - 0; Metazoa - 12;
Fungi - 2; Plants - 890; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink). | chr5:16562129-16563553
REVERSE
Length = 307
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNV 314
+ R+ + K+R KR +R F K I+Y RK LA+ RPR+RG+F R V +
Sbjct: 212 AEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVEI 263
>AT3G21175.1 | Symbols: ZML1, TIFY2B | ZML1 (ZIM-LIKE 1);
sequence-specific DNA binding / transcription factor/
zinc ion binding | chr3:7422832-7424598 FORWARD
Length = 297
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFV 306
V +R A+L++FR+KRK R FDK IRY RK++A R R +GQF
Sbjct: 140 VPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 183
>AT3G21175.3 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); transcription
factor | chr3:7422832-7423765 FORWARD
Length = 216
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 263 VDRREAALMKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFV 306
V +R A+L++FR+KRK R FDK IRY RK++A R R +GQF
Sbjct: 138 VPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 181
>AT2G47890.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609476 FORWARD
Length = 332
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 231 PVNICLQPGQMPTAHSWPSFGNSSSADVKINKVDRREAALMKFRQKRKERCFDKKIRYVN 290
PV+ CL + T P ++ S +IN ++R +AL ++++K+K R ++K IRY +
Sbjct: 254 PVSGCLNRCEEETVMV-PVITSTRSMTHEINSLERN-SALSRYKEKKKSRRYEKHIRYES 311
Query: 291 RKKLAERRPRVRGQFVRKVN 310
RK AE R R+RG+F + +
Sbjct: 312 RKVRAESRTRIRGRFAKAAD 331