Jatropha Genome Database

JcCA0151491.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151491.10 + phase: 0 /partial
         (133 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   219   3e-58
AT2G05590.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   160   2e-40
AT2G05590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   114   2e-26
AT5G06260.1 | Symbols:  | nucleolar protein-related | chr5:19027...    60   3e-10

>AT4G39870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins
           in 220 species: Archae - 0; Bacteria - 39; Metazoa -
           1002; Fungi - 279; Plants - 129; Viruses - 34; Other
           Eukaryotes - 535 (source: NCBI BLink). |
           chr4:18502234-18504275 FORWARD
          Length = 394

 Score =  219 bits (558), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 1/133 (0%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           VVGDRKG+VFGGLVEAPL PT+K KYQGTNSTFVFTN  G P I+RPTGANR++TLCS +
Sbjct: 262 VVGDRKGSVFGGLVEAPLIPTDK-KYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKE 320

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVYGTKYEEIL 120
           FLA+GGGG FALYLD +LL+GSS+ SETYGN CLA S+DF+VKEVELWGFVYG+KY+EIL
Sbjct: 321 FLALGGGGRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVELWGFVYGSKYDEIL 380

Query: 121 ALSRTEAPGICRW 133
           A S+T  PG+CRW
Sbjct: 381 AHSKTMEPGLCRW 393


>AT2G05590.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins
           in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403;
           Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes -
           144 (source: NCBI BLink). | chr2:2067196-2068951 FORWARD
          Length = 303

 Score =  160 bits (404), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 91/116 (78%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           V GD++GAVFG L+E PL+PT KRKYQGT+ TF+FT   G P IFRPTGANRY+ +C ++
Sbjct: 186 VAGDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNE 245

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVYGTKY 116
           FLA GGGG+FAL LD DLL  +S  SET+GN CLA S +FE+K VELWGF + ++Y
Sbjct: 246 FLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGFAHASQY 301


>AT2G05590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins
           in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307;
           Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes -
           105 (source: NCBI BLink). | chr2:2067196-2068650 FORWARD
          Length = 263

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           V GD++GAVFG L+E PL+PT KRKYQGT+ TF+FT   G P IFRPTGANRY+ +C ++
Sbjct: 186 VAGDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNE 245

Query: 61  FLAIGGGGHFALYLDGDL 78
           FLA GGGG+FAL LD DL
Sbjct: 246 FLAFGGGGNFALCLDEDL 263


>AT5G06260.1 | Symbols:  | nucleolar protein-related |
           chr5:1902755-1904835 REVERSE
          Length = 424

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           ++ D +G V+GG    P        + G   +F+F   P    I+RPTGAN     C+++
Sbjct: 269 IIKDTEGYVYGGYASQPWE--RYSDFYGDMKSFLFQLNP-KAAIYRPTGANTNIQWCATN 325

Query: 61  FLA------IGGGG---HFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFV 111
           F +      IG GG   HF L++      G +    T+G+P L+++   + + +E WG V
Sbjct: 326 FTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIV 385

Query: 112 YGTKYEE 118
             +  ++
Sbjct: 386 QASNEQD 392