Jatropha Genome Database

JcCA0151201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151201.10 + phase: 0 /partial
         (138 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42620.1 | Symbols:  | metalloendopeptidase/ zinc ion binding...   214   1e-56

>AT5G42620.1 | Symbols:  | metalloendopeptidase/ zinc ion binding |
           chr5:17066630-17071045 FORWARD
          Length = 841

 Score =  214 bits (545), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 109/123 (88%)

Query: 2   HCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSSYCDTVAKRLACWISIQKCDK 61
           HCAP EPSILQQLEEVVVMPNY+RLFPGGARKLFNIFG+SYCD  AKRLACWISIQKCD 
Sbjct: 719 HCAPREPSILQQLEEVVVMPNYNRLFPGGARKLFNIFGNSYCDEAAKRLACWISIQKCDI 778

Query: 62  DGDDRLRVCHSACQSYNLACGASLDCSDQTLFSSEEEGEGQCTGSGEMKLSWLNRLGIRF 121
           DGDDRLRVCHSACQSYN+ACGASLDCSDQTLFS+ EEG+ +CTGSGE++  W + L  R 
Sbjct: 779 DGDDRLRVCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGSGEIRSPWFSSLWSRL 838

Query: 122 FSS 124
            +S
Sbjct: 839 VAS 841