Jatropha Genome Database

JcCA0150921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150921.10 + phase: 0 
         (259 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64980.1 | Symbols:  | unknown protein | chr1:24137840-241386...   447   e-126

>AT1G64980.1 | Symbols:  | unknown protein | chr1:24137840-24138619
           REVERSE
          Length = 259

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 203/240 (84%), Positives = 226/240 (94%)

Query: 4   TMTNGEIHTVSTNGGITIEKPFKIFVGYDPREDIAYEVCHHSIMKRSSIPVEICPIIQSE 63
           T++NG++ + + N G + +KPF+IFVGYDPRED+AY+VCHHSI KRSSIPVEI PIIQS+
Sbjct: 2   TISNGDVKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSD 61

Query: 64  LRKKNLYWRERGKLESTEFSFSRFLTPYLANYEGWAMFVDCDFLYLADIKELRDLIDDKY 123
           LRKK LYWRERG+LESTEFSFSRFLTP+L++Y+GWAMFVDCDFLYLADIKEL DLIDDKY
Sbjct: 62  LRKKGLYWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKY 121

Query: 124 AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNTQTGAFLH 183
           AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNK L+PE+VNTQTGAFLH
Sbjct: 122 AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLH 181

Query: 184 RFQWLEDEDIGSIPFVWNFLEGHNKVVEGDTTTFPKAIHYTRGGPWFDAWKNCEFADLWL 243
           RFQWLEDE+IGSIPFVWNFLEGHN+VVE D TT PKA+HYTRGGPWFDAWK+CEFADLWL
Sbjct: 182 RFQWLEDEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWL 241