Jatropha Genome Database

JcCA0150831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150831.20 + phase: 0 /pseudo/partial/short
         (48 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58575.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    64   2e-11

>AT5G58575.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 19 plant
           structures; EXPRESSED DURING: 11 growth stages; CONTAINS
           InterPro DOMAIN/s: Sgf11, transcriptional regulation
           (InterPro:IPR013246); Has 148 Blast hits to 148 proteins
           in 67 species: Archae - 0; Bacteria - 0; Metazoa - 94;
           Fungi - 32; Plants - 16; Viruses - 0; Other Eukaryotes -
           6 (source: NCBI BLink). | chr5:23674399-23675224 FORWARD
          Length = 181

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVA+++F CMN GR  +AGRFAP+ EKCMGK
Sbjct: 81  FGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGK 117