Jatropha Genome Database

JcCA0150751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150751.10 - phase: 0 
         (219 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28640.1 | Symbols: AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); pr...   138   3e-33
AT4G00850.1 | Symbols: GIF3 | GIF3 (GRF1-INTERACTING FACTOR 3); ...    96   2e-20
AT1G01160.1 | Symbols: GIF2 | SSXT protein-related / transcripti...    87   1e-17
AT1G01160.2 | Symbols: GIF2 | SSXT protein-related / transcripti...    72   2e-13

>AT5G28640.1 | Symbols: AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3);
          protein binding / transcription coactivator |
          chr5:10647831-10649620 REVERSE
          Length = 210

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 71/73 (97%)

Query: 13 AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
          A YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ
Sbjct: 13 AGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72

Query: 73 PQPPTMHTQFPSS 85
          PQPP++H+Q+ S+
Sbjct: 73 PQPPSVHSQYGSA 85


>AT4G00850.1 | Symbols: GIF3 | GIF3 (GRF1-INTERACTING FACTOR 3);
          protein binding / transcription coactivator |
          chr4:357675-358928 FORWARD
          Length = 223

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 3/73 (4%)

Query: 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPT 77
          NN+TT+ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYLAAIAD+QPQPP 
Sbjct: 19 NNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPA 78

Query: 78 MHTQFPSSGIMHP 90
                +SG M P
Sbjct: 79 ATL---TSGAMTP 88


>AT1G01160.1 | Symbols: GIF2 | SSXT protein-related /
          transcription co-activator-related | chr1:72583-73883
          FORWARD
          Length = 195

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 49/55 (89%)

Query: 18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
          NN+TT+ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYLAAIAD+Q
Sbjct: 20 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 74


>AT1G01160.2 | Symbols: GIF2 | SSXT protein-related / transcription
           co-activator-related | chr1:72583-73883 FORWARD
          Length = 229

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 40/45 (88%)

Query: 28  YLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
           YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYLAAIAD+Q
Sbjct: 64  YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 108