Jatropha Genome Database

JcCA0150301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150301.10 - phase: 0 /partial
         (248 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25330.1 | Symbols:  | unknown protein | chr4:12957834-129586...   114   8e-26

>AT4G25330.1 | Symbols:  | unknown protein | chr4:12957834-12958683
           FORWARD
          Length = 229

 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 31  MEFQS-DDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQSS 89
           +EF+S +D+AWY V+ S   D L + +  FS E +E +    FK  D++ +F+ RFR  S
Sbjct: 36  LEFRSAEDEAWYAVEFSDICDALWISFNGFSYEHDEFYPADDFKNSDEIQEFEERFRACS 95

Query: 90  VQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXX-XXXCSCTYVLK 148
            Q+QD +C K+ +G  VCA++     EVKF+DA+VV V   KH+        C C + L 
Sbjct: 96  EQMQDIECPKVHEGTQVCATFPSVTEEVKFYDAIVVTVERTKHERDEEGNEICGCDFKLF 155

Query: 149 WHDGSLEGERTFAKISDICLTPPGNRVDPSLAAFLKIAMERI 190
           W  G    + T AK+ DICL    NR++P + +FLK A  ++
Sbjct: 156 WKQGPWINQVTTAKVGDICLRAKDNRINPKVVSFLKEARRKL 197