Jatropha Genome Database

JcCA0149621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.20 - phase: 2 /partial
         (286 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14 | UBP14 (UBIQUITIN-S...   378   e-105

>AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14 | UBP14
           (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific
           protease | chr3:7203001-7208340 REVERSE
          Length = 797

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 214/263 (81%), Gaps = 4/263 (1%)

Query: 23  TFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLL 82
           T  +T GLTSFPDYLVLHMRKFVMEEGWVPKKL            SHMRS+GLQPGE+LL
Sbjct: 539 TAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPGEELL 598

Query: 83  PEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSHMDDP 142
           P+G P + +ES Q VANE+IV+QLVSMGF+ LHCQKAAINT N GVEEAMNWLLSHMDDP
Sbjct: 599 PDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 658

Query: 143 DIDVPISQGVLGTEVVDQSKVDTLISFGFQEELARKALKASGGDIEKATDWIFSNPDASV 202
           DID PIS     T  +DQS VDTL+SFGF E++ARKALKASGGDIEKATDW+F+NP+ASV
Sbjct: 659 DIDAPISH---QTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPNASV 715

Query: 203 SSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFND 262
           S    ++++S    P  +GLPDGGG+Y+LFGIVSH+GTS  CGHYVAH+ K+GRW IFND
Sbjct: 716 SDMDVSSSNS-AQTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFND 774

Query: 263 NKVGASVNPPKDMGYLYFFERLD 285
           +KVG S +PPKDMGY+YFF+RLD
Sbjct: 775 DKVGISTDPPKDMGYVYFFQRLD 797