Jatropha Genome Database

JcCA0149501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149501.20 - phase: 0 /partial
         (106 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51630.1 | Symbols:  | unknown protein | chr1:19142141-191440...   147   1e-36
AT3G21190.1 | Symbols:  | unknown protein | chr3:7432579-7434543...   140   2e-34

>AT1G51630.1 | Symbols:  | unknown protein | chr1:19142141-19144082
           REVERSE
          Length = 423

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 83/106 (78%)

Query: 1   MTIIMNLYLWKLLQESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYAN 60
           + I+ +++     +E+IMP DKKTK+LE E+SE+E VIDFY+ S+SDVFVPAI GLFYAN
Sbjct: 318 LNILKDIFPKTYTKEAIMPSDKKTKYLELENSEYENVIDFYISSRSDVFVPAIPGLFYAN 377

Query: 61  VAGKRIASGKTQILVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
             GKRIA GK Q+LVPA I GTS    N+ SPYISKKNHLAYSCFC
Sbjct: 378 TVGKRIALGKPQVLVPAEISGTSGLPANYISPYISKKNHLAYSCFC 423


>AT3G21190.1 | Symbols:  | unknown protein | chr3:7432579-7434543
           REVERSE
          Length = 422

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 81/106 (76%)

Query: 1   MTIIMNLYLWKLLQESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYAN 60
           + I+ +++     +E+IMP  K++K+LES  SE+E VIDFY+ S+SDVFVPAISGLFYAN
Sbjct: 317 LNILKDIFPKTFTKEAIMPASKRSKYLESVSSEYENVIDFYISSRSDVFVPAISGLFYAN 376

Query: 61  VAGKRIASGKTQILVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
             GKRIA GK Q+LVPA I  TS   T+  SPYISKKNHLAYSCFC
Sbjct: 377 TVGKRIALGKPQVLVPAEISETSGLATDFISPYISKKNHLAYSCFC 422