Jatropha Genome Database

JcCA0149441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.20 - phase: 0 /partial
         (81 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74530.3 | Symbols:  | unknown protein | chr1:28009723-280120...   112   6e-26
AT1G74530.1 | Symbols:  | unknown protein | chr1:28009866-280120...    56   5e-09

>AT1G74530.3 | Symbols:  | unknown protein | chr1:28009723-28012044
           REVERSE
          Length = 314

 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 1   YDAAILHTSFARLLGHPKASHLEASNE-LQFFHELVARLNNRIKGSEAVISELWYVEEYD 59
           YDAAILHTS ARLLG P +     S++ LQ  HELV RLNN+I+G +A++SELWYVEE+D
Sbjct: 233 YDAAILHTSLARLLGPPISPTEAGSDDHLQLLHELVTRLNNQIRGFKAIVSELWYVEEFD 292

Query: 60  VLALALNGRMNIRKFQLGC 78
           +LALAL GRMN+R F LGC
Sbjct: 293 LLALALGGRMNVRSFPLGC 311


>AT1G74530.1 | Symbols:  | unknown protein | chr1:28009866-28012044
           REVERSE
          Length = 289

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 1   YDAAILHTSFARLLGHPKASHLEASNE-LQFFHELVARLNNRIKG 44
           YDAAILHTS ARLLG P +     S++ LQ  HELV RLNN+I+G
Sbjct: 233 YDAAILHTSLARLLGPPISPTEAGSDDHLQLLHELVTRLNNQIRG 277