Jatropha Genome Database

JcCA0149441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.10 - phase: 0 /pseudo/partial
         (315 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47640.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...   169   3e-42
AT4G36060.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...    63   3e-10
AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...    63   3e-10
AT4G36060.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    62   4e-10
AT3G19860.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    62   5e-10
AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA...    53   3e-07
AT3G23210.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    48   8e-06

>AT3G47640.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:17568035-17569101 FORWARD
          Length = 240

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/220 (49%), Positives = 131/220 (59%), Gaps = 32/220 (14%)

Query: 119 KGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIE 178
           KGKVPK I+KA RE+LKRE                Q N+GKASIL EAT+ LKD   QIE
Sbjct: 23  KGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFLKDVFGQIE 82

Query: 179 CLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKPDLN-APPPE- 236
            L+KE+ASLLSES YVTTEKNELKEE SVL+T+I  LQ+E+EAR  QSKPDLN +P PE 
Sbjct: 83  SLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEY 142

Query: 237 ------FEQPELTSHFPGDSLRLPT--------ADASLQQTSAVFVIPFHHDLQTYSVT- 281
                  + PE  S FPG    LP         +  +L   + V V+P   D QT  ++ 
Sbjct: 143 HHHHYQQQHPERVSQFPG----LPIFQGPGFQQSATTLHPPATVLVLPIQPDPQTQDISE 198

Query: 282 -----------ASNVSKPHARYPNPADSWPSQLLGEQVTA 310
                      +SNVSKP  RY + ADSW S+LLGE++ A
Sbjct: 199 MTQAQQPLMFNSSNVSKPCPRYASAADSWSSRLLGERLKA 238


>AT4G36060.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:17055521-17056567 FORWARD
          Length = 268

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query: 127 HKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKENAS 186
            KAEREKL+R++               +P + KAS+L++  ++LKD + Q++ LK E  +
Sbjct: 30  QKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 89

Query: 187 LLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARM 223
           L  ES  +  EK+EL+EE + L++ IE L ++ + R+
Sbjct: 90  LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRI 126


>AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:6903842-6905863 FORWARD
          Length = 337

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 127 HKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKENAS 186
            KA REKL+RE+               +P N KA+IL++  +LLK+   ++  LK E  +
Sbjct: 62  QKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTA 121

Query: 187 LLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKP 228
           L  ES  +T EKN+L+EE + L++ IE L  + + R+    P
Sbjct: 122 LTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSP 163


>AT4G36060.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:17055397-17056567 FORWARD
          Length = 286

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query: 127 HKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKENAS 186
            KAEREKL+R++               +P + KAS+L++  ++LKD + Q++ LK E  +
Sbjct: 48  QKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107

Query: 187 LLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARM 223
           L  ES  +  EK+EL+EE + L++ IE L ++ + R+
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRI 144


>AT3G19860.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:6904579-6905863 FORWARD
          Length = 284

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 127 HKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKENAS 186
            KA REKL+RE+               +P N KA+IL++  +LLK+   ++  LK E  +
Sbjct: 9   QKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTA 68

Query: 187 LLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKP 228
           L  ES  +T EKN+L+EE + L++ IE L  + + R+    P
Sbjct: 69  LTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSP 110


>AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA
           binding / transcription factor | chr5:22217270-22218993
           FORWARD
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 18/118 (15%)

Query: 155 PNNGKASILSEATKLLKDFLVQIECLKKENASLLSESHYVTTEKNELKEENSVLQTQIEG 214
           P   KA+IL +A +++     + + LK  N+SL  +   + TEKNEL++E   L+T+ E 
Sbjct: 104 PKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEK 163

Query: 215 LQSELEARMVQSKPDLNAPPPEFEQPELTSHFPGDSLRLPTADASLQ-QTSAVFVIPF 271
           L+ +L+A        +NAP P F        FP   + +PTA AS Q Q     ++P 
Sbjct: 164 LEQQLKA--------MNAPQPSF--------FPAPPM-MPTAFASAQGQAPGNKMVPI 204


>AT3G23210.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:8283255-8284915 REVERSE
          Length = 320

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 114 CHGKSK--GKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQ-PNNGKASILSEATKLL 170
           C GK +  G   K   KA REKL+RE+               + P   K++IL +A +++
Sbjct: 151 CSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVV 210

Query: 171 KDFLVQIECLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQS 226
                +   L++ N  LL E   +  +KNEL+EE  VL+ + E ++ +L++ +V S
Sbjct: 211 NQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPS 266