Jatropha Genome Database
- JcCA0149281.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0149281.10 + phase: 0
(885 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11960.1 | Symbols: | cleavage and polyadenylation specifici... 1032 0.0
AT3G11960.2 | Symbols: | cleavage and polyadenylation specifici... 956 0.0
AT3G55200.1 | Symbols: | splicing factor, putative | chr3:20460... 104 2e-22
AT3G55220.1 | Symbols: | splicing factor, putative | chr3:20467... 104 2e-22
AT4G05420.1 | Symbols: DDB1A | DDB1A (DAMAGED DNA BINDING PROTEI... 95 2e-19
AT4G05420.2 | Symbols: DDB1A | DDB1A (DAMAGED DNA BINDING PROTEI... 95 2e-19
AT4G21100.1 | Symbols: DDB1B | DDB1B (Damaged DNA Binding Protei... 93 7e-19
>AT3G11960.1 | Symbols: | cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein | chr3:3786431-3793160 FORWARD
Length = 1379
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/890 (59%), Positives = 643/890 (72%), Gaps = 56/890 (6%)
Query: 24 GTHYLAKCVLRGSAVLQVVYGHFRSSSSNDIIFGKETXXXXXXXXXXXXXXXXCEQPIFG 83
G HYLAKC+LR S VLQV YG+FRS SS DI+FGKET CEQ +FG
Sbjct: 33 GDHYLAKCILRPSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFG 92
Query: 84 TIKDLAVIPSNGKLHARSPQ-EKDLLAVVSDSGKLSFLTFCNEMLRFFPLTQVQLSSPGN 142
TIKDLAVIP + KL++ S Q KDLLAV+SDSGKLSFL+F NEM RF P+ VQLS+PGN
Sbjct: 93 TIKDLAVIPQSSKLYSNSLQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGN 152
Query: 143 SRHQLGRMLAVDSSGCFIASSAYVDQLALFSLSVSGGSDLIDKK--YPQAK--------- 191
SR QLGRML +DSSG F+A SAY D+ ALFSLS S D+I ++ YP
Sbjct: 153 SRIQLGRMLTIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQRISYPSEDGGNGSSIQA 212
Query: 192 ---------YIWYNMEHVLYFKGFLSI---KRGAXXXXXXXXXWNIGEHAINVISLYVEA 239
+I + + L+I ++G+ WN+ E +I +IS YVE
Sbjct: 213 ISGTIWSMCFISKDFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICLISEYVET 272
Query: 240 GPIAHDIIEVPHSNGFAFLFRVGDALLMDLRDAHNPCCIYRTSLNFLPTAVEEQNFVEES 299
G +AH I+EVPHS+GFAFLFR+GD LLMDLRD NPCC++RTSL+F+P ++ E++FVEES
Sbjct: 273 GALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEES 332
Query: 300 CRVHDVDDDGLFNVAACALLELRDY-----DPMCIDSEGSNIKSTSNYMCSWSWGPESDK 354
CRV D DD+G NV CALLELRD+ DPM ID+E K +S + SW+W PE++
Sbjct: 333 CRVQDGDDEGC-NVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNH 391
Query: 355 NPRMIFCIDTGEFFMIEISFDSEGLKVNLSDCLYKGQPCKSLLWVESGFLAAIVEMGDGI 414
NPRMI C+D G+FFM E+ ++ +G+KVNLS+CLYKG PCK +LW+E GFLA EM DG
Sbjct: 392 NPRMIICLDNGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGT 451
Query: 415 VLKVEDGRLLYTSPIQNIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIRTGISVEK 474
V K+ +L + S IQNIAPILD V+D +EKRDQ+FACCGV PEGSLRIIR+GI+VEK
Sbjct: 452 VFKLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEK 511
Query: 475 LVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVGVSFTDVTDSVGFQPDVC 534
L+KTA +YQGITGTWT++MKL D+YHSFLV+SFVEETRVLSVG+SF DVTDSVGFQ DVC
Sbjct: 512 LLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVC 571
Query: 535 TLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCTSWFPDNTSISLGAVGHDL 594
T ACGLV DGLLVQIHQ A++LC+PT AH++GIP+SSP +SWFP+N SISLGAVG +L
Sbjct: 572 TFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNL 631
Query: 595 IVVSTSNPCFLYILGIRLLSTYHYEIYELQHLRLLNELSCISIPQKHFERKRLSSSNLVE 654
IVVSTSNPCFL ILG++ +S+ EIYE+Q + L E+SCIS+PQKH +KR S+
Sbjct: 632 IVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRDSS--P 689
Query: 655 DN-SGPTLPIGMDIGITFVVGTHRPSVEVLSFVPHE-GLKVLACGTISLTNTLGTAVSGC 712
DN +P M+ G TF++GTH+PSVEVLSF G++VLA G +SLTNT+GT +SGC
Sbjct: 690 DNFCKAAIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGC 749
Query: 713 IPQDVRLVLVDRSYVLSGLRNGMLLRFEWPPASSMSSLEFPHYGCPIDSCMVNVGGALSN 772
IPQDVRLVLVD+ YVLSGLRNGMLLRFEW P S+ S L P Y M V G
Sbjct: 750 IPQDVRLVLVDQLYVLSGLRNGMLLRFEWAPFSNSSGLNCPDYFSHCKEEMDTVVG---- 805
Query: 773 MSAMSFEPQTCAVELRSKAMDELPVNLQLISTRRIGITPVFLVPLSDSLDADMIALSDRP 832
D LPVNL LI+TRRIGITPVFLVP SDSLD+D+IALSDRP
Sbjct: 806 ------------------KKDNLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRP 847
Query: 833 WLLQTAKHSLSYSSISFQPSTHATPVCSAECPKGILFVAENSLHLVRVCY 882
WLLQTA+ SLSY+SISFQPSTHATPVCS ECP+GILFV+EN LHLV + +
Sbjct: 848 WLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHLVEMVH 897
>AT3G11960.2 | Symbols: | cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein | chr3:3786431-3793160 FORWARD
Length = 1329
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/868 (57%), Positives = 610/868 (70%), Gaps = 70/868 (8%)
Query: 24 GTHYLAKCVLRGSAVLQVVYGHFRSSSSNDIIFGKETXXXXXXXXXXXXXXXXCEQPIFG 83
G HYLAKC+LR S VLQV YG+FRS SS DI+FGKET CEQ +FG
Sbjct: 33 GDHYLAKCILRPSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFG 92
Query: 84 TIKDLAVIPSNGKLHARSPQ-EKDLLAVVSDSGKLSFLTFCNEMLRF-FPLTQVQLSSPG 141
TIKDLAVIP + KL++ S Q KDLLAV+SDSGKLSFL+F NEM R +P S G
Sbjct: 93 TIKDLAVIPQSSKLYSNSLQMGKDLLAVLSDSGKLSFLSFSNEMHRISYP------SEDG 146
Query: 142 NSRHQLGRMLAVDSSGCFIASSAYVDQLALFSLSVSGGSDLIDKKYPQAKYIWYNMEHVL 201
+ + + S CFI+ F+ S K+Y I N
Sbjct: 147 GNGSSIQAISGTIWSMCFISKD--------FNES---------KEYAPILAIVIN----- 184
Query: 202 YFKGFLSIKRGAXXXXXXXXXWNIGEHAINVISLYVEAGPIAHDIIEVPHSNGFAFLFRV 261
++G+ WN+ E +I +IS YVE G +AH I+EVPHS+GFAFLFR+
Sbjct: 185 --------RKGSLMNELALFRWNVKEESICLISEYVETGALAHSIVEVPHSSGFAFLFRI 236
Query: 262 GDALLMDLRDAHNPCCIYRTSLNFLPTAVEEQNFVEESCRVHDVDDDGLFNVAACALLEL 321
GD LLMDLRD NPCC++RTSL+F+P ++ E++FVEESCRV D DD+G NV CALLEL
Sbjct: 237 GDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQDGDDEGC-NVVVCALLEL 295
Query: 322 RDY-----DPMCIDSEGSNIKSTSNYMCSWSWGPESDKNPRMIFCIDTGEFFMIEISFDS 376
RD+ DPM ID+E K +S + SW+W PE++ NPRMI C+D G+FFM E+ ++
Sbjct: 296 RDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMIICLDNGDFFMFELIYED 355
Query: 377 EGLKVNLSDCLYKGQPCKSLLWVESGFLAAIVEMGDGIVLKVEDGRLLYTSPIQNIAPIL 436
+G+KVNLS+CLYKG PCK +LW+E GFLA EM DG V K+ +L + S IQNIAPIL
Sbjct: 356 DGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPIL 415
Query: 437 DMLVVDCHDEKRDQMFACCGVAPEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLN 496
D V+D +EKRDQ+FACCGV PEGSLRIIR+GI+VEKL+KTA +YQGITGTWT++MKL
Sbjct: 416 DFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLT 475
Query: 497 DLYHSFLVISFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQL 556
D+YHSFLV+SFVEETRVLSVG+SF DVTDSVGFQ DVCT ACGLV DGLLVQIHQ A++L
Sbjct: 476 DVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGLLVQIHQDAIRL 535
Query: 557 CLPTKIAHAEGIPLSSPVCTSWFPDNTSISLGAVGHDLIVVSTSNPCFLYILGIRLLSTY 616
C+PT AH++GIP+SSP +SWFP+N SISLGAVG +LIVVSTSNPCFL ILG++ +S+
Sbjct: 536 CMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSVSSQ 595
Query: 617 HYEIYELQHLRLLNELSCISIPQKHFERKRLSSSNLVEDN-SGPTLPIGMDIGITFVVGT 675
EIYE+Q + L E+SCIS+PQKH +KR S+ DN +P M+ G TF++GT
Sbjct: 596 CCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRDSS--PDNFCKAAIPSAMEQGYTFLIGT 653
Query: 676 HRPSVEVLSFVPHE-GLKVLACGTISLTNTLGTAVSGCIPQDVRLVLVDRSYVLSGLRNG 734
H+PSVEVLSF G++VLA G +SLTNT+GT +SGCIPQDVRLVLVD+ YVLSGLRNG
Sbjct: 654 HKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNG 713
Query: 735 MLLRFEWPPASSMSSLEFPHYGCPIDSCMVNVGGALSNMSAMSFEPQTCAVELRSKAMDE 794
MLLRFEW P S+ S L P Y M V G D
Sbjct: 714 MLLRFEWAPFSNSSGLNCPDYFSHCKEEMDTVVG----------------------KKDN 751
Query: 795 LPVNLQLISTRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTAKHSLSYSSISFQPSTH 854
LPVNL LI+TRRIGITPVFLVP SDSLD+D+IALSDRPWLLQTA+ SLSY+SISFQPSTH
Sbjct: 752 LPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTH 811
Query: 855 ATPVCSAECPKGILFVAENSLHLVRVCY 882
ATPVCS ECP+GILFV+EN LHLV + +
Sbjct: 812 ATPVCSFECPQGILFVSENCLHLVEMVH 839
>AT3G55200.1 | Symbols: | splicing factor, putative |
chr3:20460533-20464361 FORWARD
Length = 1214
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/460 (21%), Positives = 191/460 (41%), Gaps = 92/460 (20%)
Query: 423 LLYTSPIQNIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIRTGISVEKLVKTASIY 482
L+ ++++ P++DM V++ +E+ Q+F+ CG P SLRI+R G+++ ++ + +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 483 QGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVG 542
+ WT++ ++D + +++V+SF T VLS+G +V DS GF +LA L+G
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 543 DGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCTSWFPDNTSISLGAVGHDLIVVSTSNP 602
D L+Q+H P I H I + P SI +V++ S
Sbjct: 511 DDSLMQVH--------PNGIRH---IREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGG 559
Query: 603 CFLYILGIRLLSTYHYEIYELQHLRLLNELSCISIPQKHFERKRLSSSNLVEDNSGPTLP 662
+Y + ++ E++ + +++C+ I +P
Sbjct: 560 ELIY-----FEADMTGQLMEVEKHEMSGDVACLDI---------------------APVP 593
Query: 663 IGMDIGITFVVGTHRPSVEVLSFVPHEGLKVLACGTISLT--NTLGTAVSGCIPQDVRLV 720
G VG++ +V +LS P + L++L+ ++S + L V I D
Sbjct: 594 EGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGAD 653
Query: 721 LVDRSYVLSGLRNGMLLRFEWPPASSMSSLEFPHYGCPIDSCMVNVGGALSNMSAMSFEP 780
++ SGL+NG+L R + + V G LS+
Sbjct: 654 HPANLFLNSGLQNGVLFR----------------------TVVDMVTGQLSDS------- 684
Query: 781 QTCAVELRSKAMDELPVNLQLISTRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTAKH 840
+R +G+ P L +S + M+ LS RPWL +
Sbjct: 685 ----------------------RSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRG 722
Query: 841 SLSYSSISFQPSTHATPVCSAECPKGILFVAENSLHLVRV 880
+ +S++ A P S +C +G++ VA ++L + +
Sbjct: 723 HFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMI 762
>AT3G55220.1 | Symbols: | splicing factor, putative |
chr3:20467116-20470944 REVERSE
Length = 1214
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/460 (21%), Positives = 191/460 (41%), Gaps = 92/460 (20%)
Query: 423 LLYTSPIQNIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIRTGISVEKLVKTASIY 482
L+ ++++ P++DM V++ +E+ Q+F+ CG P SLRI+R G+++ ++ + +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 483 QGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVG 542
+ WT++ ++D + +++V+SF T VLS+G +V DS GF +LA L+G
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 543 DGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCTSWFPDNTSISLGAVGHDLIVVSTSNP 602
D L+Q+H P I H I + P SI +V++ S
Sbjct: 511 DDSLMQVH--------PNGIRH---IREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGG 559
Query: 603 CFLYILGIRLLSTYHYEIYELQHLRLLNELSCISIPQKHFERKRLSSSNLVEDNSGPTLP 662
+Y + ++ E++ + +++C+ I +P
Sbjct: 560 ELIY-----FEADMTGQLMEVEKHEMSGDVACLDI---------------------APVP 593
Query: 663 IGMDIGITFVVGTHRPSVEVLSFVPHEGLKVLACGTISLT--NTLGTAVSGCIPQDVRLV 720
G VG++ +V +LS P + L++L+ ++S + L V I D
Sbjct: 594 EGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGAD 653
Query: 721 LVDRSYVLSGLRNGMLLRFEWPPASSMSSLEFPHYGCPIDSCMVNVGGALSNMSAMSFEP 780
++ SGL+NG+L R + + V G LS+
Sbjct: 654 HPANLFLNSGLQNGVLFR----------------------TVVDMVTGQLSDS------- 684
Query: 781 QTCAVELRSKAMDELPVNLQLISTRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTAKH 840
+R +G+ P L +S + M+ LS RPWL +
Sbjct: 685 ----------------------RSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRG 722
Query: 841 SLSYSSISFQPSTHATPVCSAECPKGILFVAENSLHLVRV 880
+ +S++ A P S +C +G++ VA ++L + +
Sbjct: 723 HFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMI 762
>AT4G05420.1 | Symbols: DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN
1A); DNA binding / protein binding |
chr4:2746288-2752663 FORWARD
Length = 1088
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 122/541 (22%), Positives = 218/541 (40%), Gaps = 116/541 (21%)
Query: 347 SWGPESDKNPRMIFCIDTGEFFMIEISFDSE---GLKVNLSDCLYKGQPCKSLLWVESGF 403
++G R + G ++ I+ + E GLK+ L L + ++ ++++
Sbjct: 257 AYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIEL---LGETSIASTISYLDNAV 313
Query: 404 LAAIVEMGDGIVLKVE---DGRLLYTSPIQ---NIAPILDMLVVDCHDEKRDQMFACCGV 457
+ GD ++K+ D + Y ++ N+ PI+D VVD + + Q+ C G
Sbjct: 314 VFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGA 373
Query: 458 APEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVG 517
+GSLR++R GI + + + + QGI G W+L+ +++ + +FLV+SF+ ETR+L++
Sbjct: 374 FKDGSLRVVRNGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMN 431
Query: 518 V-SFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCT 576
+ + T+ GF V TL C LVQ+ +V+L T + +
Sbjct: 432 LEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSST----------TRELRD 481
Query: 577 SWF-PDNTSISLGAVGHDLIVVSTSNPCFLYILGIRLLSTYHYEIYELQHLRLLNELSCI 635
W P ++++ ++++T +Y L ++ E+QH L E+SC+
Sbjct: 482 EWHAPAGFTVNVATANASQVLLATGGGHLVY------LEIGDGKLTEVQHALLEYEVSCL 535
Query: 636 SIPQKHFERKRLSSSNLVEDNSGPTLPIGMDIGITFVVGTHRPSVEVLSFVPHEGLKVLA 695
I N + DN P +G+ + S+ L+ + E L
Sbjct: 536 DI-------------NPIGDN--PNYSQLAAVGMWTDISVRIFSLPELTLITKEQLG--- 577
Query: 696 CGTISLTNTLGTAVSGCIPQDVRLVLVDR-SYVLSGLRNGMLLRFEWPPASSMSSLEFPH 754
G I IP+ V L + SY+L L +G LL F+
Sbjct: 578 -GEI-------------IPRSVLLCAFEGISYLLCALGDGHLLNFQ-------------- 609
Query: 755 YGCPIDSCMVNVGGALSNMSAMSFEPQTCAVELRSKAMDELPVNLQLISTRRIGITPVFL 814
M G L + +S Q P+ L+ S++ T VF
Sbjct: 610 --------MDTTTGQLKDRKKVSLGTQ--------------PITLRTFSSK--SATHVF- 644
Query: 815 VPLSDSLDADMIALSDRPWLLQTAKHSLSYSSISFQPSTHATPVCSAECPKGILFVAENS 874
A SDRP ++ ++ L YS+++ + +H P SA P + E
Sbjct: 645 ------------AASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGE 692
Query: 875 L 875
L
Sbjct: 693 L 693
>AT4G05420.2 | Symbols: DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN
1A); DNA binding / protein binding |
chr4:2746288-2752663 FORWARD
Length = 1067
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/531 (22%), Positives = 215/531 (40%), Gaps = 116/531 (21%)
Query: 357 RMIFCIDTGEFFMIEISFDSE---GLKVNLSDCLYKGQPCKSLLWVESGFLAAIVEMGDG 413
R + G ++ I+ + E GLK+ L L + ++ ++++ + GD
Sbjct: 246 RYLLGDHAGMIHLLVITHEKEKVTGLKIEL---LGETSIASTISYLDNAVVFVGSSYGDS 302
Query: 414 IVLKVE---DGRLLYTSPIQ---NIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIR 467
++K+ D + Y ++ N+ PI+D VVD + + Q+ C G +GSLR++R
Sbjct: 303 QLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVR 362
Query: 468 TGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVGV-SFTDVTDS 526
GI + + + + QGI G W+L+ +++ + +FLV+SF+ ETR+L++ + + T+
Sbjct: 363 NGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEI 420
Query: 527 VGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCTSWF-PDNTSI 585
GF V TL C LVQ+ +V+L T + + W P ++
Sbjct: 421 EGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSST----------TRELRDEWHAPAGFTV 470
Query: 586 SLGAVGHDLIVVSTSNPCFLYILGIRLLSTYHYEIYELQHLRLLNELSCISIPQKHFERK 645
++ ++++T +Y L ++ E+QH L E+SC+ I
Sbjct: 471 NVATANASQVLLATGGGHLVY------LEIGDGKLTEVQHALLEYEVSCLDI-------- 516
Query: 646 RLSSSNLVEDNSGPTLPIGMDIGITFVVGTHRPSVEVLSFVPHEGLKVLACGTISLTNTL 705
N + DN P +G+ + S+ L+ + E L G I
Sbjct: 517 -----NPIGDN--PNYSQLAAVGMWTDISVRIFSLPELTLITKEQLG----GEI------ 559
Query: 706 GTAVSGCIPQDVRLVLVDR-SYVLSGLRNGMLLRFEWPPASSMSSLEFPHYGCPIDSCMV 764
IP+ V L + SY+L L +G LL F+ M
Sbjct: 560 -------IPRSVLLCAFEGISYLLCALGDGHLLNFQ----------------------MD 590
Query: 765 NVGGALSNMSAMSFEPQTCAVELRSKAMDELPVNLQLISTRRIGITPVFLVPLSDSLDAD 824
G L + +S Q P+ L+ S++ T VF
Sbjct: 591 TTTGQLKDRKKVSLGTQ--------------PITLRTFSSK--SATHVF----------- 623
Query: 825 MIALSDRPWLLQTAKHSLSYSSISFQPSTHATPVCSAECPKGILFVAENSL 875
A SDRP ++ ++ L YS+++ + +H P SA P + E L
Sbjct: 624 --AASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGEL 672
>AT4G21100.1 | Symbols: DDB1B | DDB1B (Damaged DNA Binding Protein 1
B); damaged DNA binding / protein binding |
chr4:11258916-11265309 REVERSE
Length = 1088
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 126/534 (23%), Positives = 220/534 (41%), Gaps = 122/534 (22%)
Query: 357 RMIFCIDTGEFFMIEISFDSE---GLKVNLSDCLYKGQPCKSLLWVESGFLAAIVEMGDG 413
R + G ++ I+ + E GLK+ L L + S+ ++++ + GD
Sbjct: 267 RYLLGDHAGLIHLLVITHEKEKVTGLKIEL---LGETSIASSISYLDNAVVFVGSSYGDS 323
Query: 414 IVLKVE---DGRLLYTSPIQ---NIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIR 467
++K+ D + Y ++ N+ PI+D VVD + + Q+ C G +GSLRI+R
Sbjct: 324 QLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 383
Query: 468 TGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVGV-SFTDVTDS 526
GI + + + + QGI G W+L+ +++ + +FLV+SF+ ETR+L++ + + T+
Sbjct: 384 NGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEI 441
Query: 527 VGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCTSW-FPDNTSI 585
GF +V TL C LVQ+ +V+L T + + W P S+
Sbjct: 442 EGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSST----------TRELRNKWDAPAGFSV 491
Query: 586 SLGAVGHDLIVVSTSNPCFLYI-LGIRLLSTYHYEIYELQHLRLLNELSCISIPQKHFER 644
++ ++++T +Y+ +G L+ E++H+ L E+SC+ I
Sbjct: 492 NVATANASQVLLATGGGHLVYLEIGDGTLT-------EVKHVLLEYEVSCLDI------- 537
Query: 645 KRLSSSNLVEDNSGPT--LPIGMDIGITFVVGTHRPSVEVLSFVPHEGLKVLACGTISLT 702
N + DN + +GM I SV + VL T+
Sbjct: 538 ------NPIGDNPNYSQLAAVGMWTDI---------SVRIF---------VLPDLTLITK 573
Query: 703 NTLGTAVSGCIPQDVRLVLVDR-SYVLSGLRNGMLLRFEWPPASSMSSLEFPHYGCPIDS 761
LG + IP+ V L + SY+L L +G LL F+ S
Sbjct: 574 EELGGEI---IPRSVLLCAFEGISYLLCALGDGHLLNFQLDT-----------------S 613
Query: 762 CMVNVGGALSNMSAMSFEPQTCAVELRSKAMDELPVNLQLISTRRIGITPVFLVPLSDSL 821
C G L + +S + P+ L+ S++ T VF
Sbjct: 614 C-----GKLRDRKKVSLGTR--------------PITLRTFSSK--SATHVF-------- 644
Query: 822 DADMIALSDRPWLLQTAKHSLSYSSISFQPSTHATPVCSAECPKGILFVAENSL 875
A SDRP ++ + L YS+++ + +H P SA P + E L
Sbjct: 645 -----AASDRPAVIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGEL 693