Jatropha Genome Database

JcCA0149151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149151.10 - phase: 2 /pseudo/partial
         (625 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04920.1 | Symbols: SFR6 | SFR6 (SENSITIVE TO FREEZING 6) | c...   927   0.0  

>AT4G04920.1 | Symbols: SFR6 | SFR6 (SENSITIVE TO FREEZING 6) |
           chr4:2497931-2504996 FORWARD
          Length = 1278

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/575 (80%), Positives = 495/575 (86%), Gaps = 15/575 (2%)

Query: 60  MEEDSMSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPC 119
           ME D +SPATVFC++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIP 
Sbjct: 77  MEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 136

Query: 120 SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 179
           S AN PFWIPIHI+IPERPTECAVFNV+ADSPRDSVQFIEWSPTSCPRALLIANFHGRIT
Sbjct: 137 SKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 196

Query: 180 IWTQPSQGAANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLXXXXXXXXXXXXXFE 239
           IWTQP+QG+ANLV DA+ WQ EHEWRQDIAVVTKWL+G SPYRWL             FE
Sbjct: 197 IWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFE 256

Query: 240 EKFLSQQSQTS---------------GSVQLHWSQWPPSQNNATPKWFSTSKGLLGAGPS 284
           EKFLSQ S++S               GSVQ+HWSQWP +Q +  PKWFST KGLLGAGPS
Sbjct: 257 EKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPS 316

Query: 285 GIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGPGPGFQAIAKTSTSNGVPPSLNPP 344
           GIMAADAI+TDSGAMHVAGVPIVNPST+VVWEVTPGPG G QA  K ST + VPPSL+  
Sbjct: 317 GIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSS 376

Query: 345 TWSGFAPLAAYLFSWQEYLISEAKHGKKQTDQDFSDAVSLHCSPVSNFSAYVSPEAAAQS 404
           +W+GFAPLAAYLFSWQEYLISE K GKK +DQD SDA+SL CSPVSNFSAYVSPEAAAQS
Sbjct: 377 SWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQS 436

Query: 405 AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPV 464
           AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+QPV
Sbjct: 437 AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 496

Query: 465 VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIHPTNDFKNHQAVAAGPTSDVRKTSDSGVE 524
           VLHQIFGNPTS+FGGQ P QTVWVS+VD SI PT DFKNHQ  AAGP+ D  K  DSG E
Sbjct: 497 VLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDE 556

Query: 525 KAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFALVDSYQINVGS 584
           KA  + FDPFDLPSD+R+LARIVYSAHGGEIAIAFLRGGVHIFSGP F+ V++YQINVGS
Sbjct: 557 KANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGS 616

Query: 585 AIAAPAFSSTSCCSASVWHDASKDRTILKIIRVLP 619
           AIAAPAFS TSCCSASVWHDA+KD  +LKIIRVLP
Sbjct: 617 AIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLP 651