Jatropha Genome Database
- JcCA0148831.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0148831.10 + phase: 0
(288 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succin... 351 3e-97
AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succin... 248 3e-66
AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin... 247 6e-66
AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin... 247 6e-66
>AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succinate
dehydrogenase | chr5:26034515-26035922 REVERSE
Length = 309
Score = 351 bits (901), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 202/279 (72%), Gaps = 44/279 (15%)
Query: 54 NFPVLEGHPAGQEHAQESIETYDTIK---TNIKRLIKEFKIYRWNPDIPNRKPFLQSYYI 110
+FP+L GH A Q+ +++++++ D K K + KEFKIYRWNPD PN KPFLQS+++
Sbjct: 31 DFPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFV 90
Query: 111 DLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGICGSCAMNIDGTNTVACLKPIDADTTK 170
DLS+CGPMVLDVLQKIKAEDD+SLSYRRSCREGICGSC+MNIDGTNTVACLKPI+ +T+K
Sbjct: 91 DLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSK 150
Query: 171 PTIITPLPHMFVIKDLVVDLTNFYNQY--------------------------------- 197
PTIITPLPHM+VIKDLVVDLTNFY QY
Sbjct: 151 PTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLY 210
Query: 198 --------SASCPSYWWSPEEFLGPAPLLHAYRWISDSRDEFTEERLQALTEDTKKLYKC 249
+ SCPSYWW+PEEF GPA LL AYRWISDSRDE+ EERLQA+TE K+Y+C
Sbjct: 211 ECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRC 270
Query: 250 RTIKNCTACCPKSLNPADAIHKMKTKHLLSQPVERLETF 288
R IKNCTA CPK LNPA AI KMK+KHLLS P+ R E+
Sbjct: 271 RAIKNCTATCPKGLNPASAILKMKSKHLLSDPLVRTESV 309
>AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succinate
dehydrogenase | chr5:16281462-16283296 FORWARD
Length = 280
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/230 (56%), Positives = 148/230 (64%), Gaps = 45/230 (19%)
Query: 86 IKEFKIYRWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGIC 145
+K F+IYRWNPD P KP LQ Y IDL CGPMVLD L KIK E D SL++RRSCREGIC
Sbjct: 48 LKTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 106
Query: 146 GSCAMNIDGTNTVACLKPIDADTTKPTIITPLPHMFVIKDLVVDLTNFYNQY-------- 197
GSCAMNIDG N +ACL I++ +K T ITPLPHMFVIKDLVVD+TNFYNQY
Sbjct: 107 GSCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 165
Query: 198 ----------------------------------SASCPSYWWSPEEFLGPAPLLHAYRW 223
S SCPSYWW+PE +LGPA LLHA RW
Sbjct: 166 RKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRW 225
Query: 224 ISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTACCPKSLNPADAIHKMK 273
ISDSRDE+T+ERL+A+ +D KLY+C TI NC CPK LNP I +K
Sbjct: 226 ISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 274
>AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
dehydrogenase | chr3:10131209-10132673 REVERSE
Length = 279
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/230 (56%), Positives = 146/230 (63%), Gaps = 45/230 (19%)
Query: 86 IKEFKIYRWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGIC 145
+K F+IYRWNPD P KP LQ+Y IDL CGPMVLD L KIK E D SL++RRSCREGIC
Sbjct: 49 LKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 107
Query: 146 GSCAMNIDGTNTVACLKPIDADTTKPTIITPLPHMFVIKDLVVDLTNFYNQY-------- 197
GSCAMNIDG N +ACL I D T ITPLPHMFVIKDLVVD+TNFYNQY
Sbjct: 108 GSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 166
Query: 198 ----------------------------------SASCPSYWWSPEEFLGPAPLLHAYRW 223
S SCPSYWW+PE +LGPA LLHA RW
Sbjct: 167 RKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRW 226
Query: 224 ISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTACCPKSLNPADAIHKMK 273
ISDSRDE+T+ERL+A+ +D KLY+C TI NC CPK LNP I +K
Sbjct: 227 ISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 275
>AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
dehydrogenase | chr3:10131209-10132673 REVERSE
Length = 279
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/230 (56%), Positives = 146/230 (63%), Gaps = 45/230 (19%)
Query: 86 IKEFKIYRWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGIC 145
+K F+IYRWNPD P KP LQ+Y IDL CGPMVLD L KIK E D SL++RRSCREGIC
Sbjct: 49 LKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 107
Query: 146 GSCAMNIDGTNTVACLKPIDADTTKPTIITPLPHMFVIKDLVVDLTNFYNQY-------- 197
GSCAMNIDG N +ACL I D T ITPLPHMFVIKDLVVD+TNFYNQY
Sbjct: 108 GSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 166
Query: 198 ----------------------------------SASCPSYWWSPEEFLGPAPLLHAYRW 223
S SCPSYWW+PE +LGPA LLHA RW
Sbjct: 167 RKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRW 226
Query: 224 ISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTACCPKSLNPADAIHKMK 273
ISDSRDE+T+ERL+A+ +D KLY+C TI NC CPK LNP I +K
Sbjct: 227 ISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 275