Jatropha Genome Database

JcCA0148631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.10 - phase: 0 /partial
         (241 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62790.1 | Symbols: DXR, PDE129 | DXR (1-DEOXY-D-XYLULOSE 5-P...   363   e-101

>AT5G62790.1 | Symbols: DXR, PDE129 | DXR (1-DEOXY-D-XYLULOSE
           5-PHOSPHATE REDUCTOISOMERASE);
           1-deoxy-D-xylulose-5-phosphate reductoisomerase |
           chr5:25214358-25217292 REVERSE
          Length = 477

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/250 (74%), Positives = 210/250 (84%), Gaps = 9/250 (3%)

Query: 1   MALNLLSPAEIKAISFLDSTKSNQLPKLPGSFSLKRKDLGRK----VQCSXXXXXXXXXX 56
           M LN LSPAE KAISFLD+++ N +PKL G FSL+R++ GR     V+CS          
Sbjct: 2   MTLNSLSPAESKAISFLDTSRFNPIPKLSGGFSLRRRNQGRGFGKGVKCSVKVQQQQQPP 61

Query: 57  XXXXXXG-----RKTWDGPKPISIVGSTGSIGTQTLDIVAENPNKFKVVALAAGSNVTLL 111
                       R++WDGPKPISIVGSTGSIGTQTLDIVAENP+KF+VVALAAGSNVTLL
Sbjct: 62  PAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLL 121

Query: 112 ADQVKTFKPQLVAVRNESLVDELKEALADVEEKPEIIPGEQGIVEVARHPDAVSVVTGIV 171
           ADQV+ FKP LVAVRNESL++ELKEALAD++ K EIIPGEQG++EVARHP+AV+VVTGIV
Sbjct: 122 ADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQGVIEVARHPEAVTVVTGIV 181

Query: 172 GCAGLKPTVAAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQG 231
           GCAGLKPTVAAIEAGKDI LANKETLIAGGPFVLPLA+K+NVKILPADSEHSAIFQCIQG
Sbjct: 182 GCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLANKHNVKILPADSEHSAIFQCIQG 241

Query: 232 LPEGALRRII 241
           LPEGALR+II
Sbjct: 242 LPEGALRKII 251