Jatropha Genome Database

JcCA0148271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148271.30 + phase: 0 
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59040.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   145   1e-35
AT3G59040.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   128   9e-31

>AT3G59040.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:21821495-21824233 REVERSE
          Length = 583

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 93/134 (69%), Gaps = 9/134 (6%)

Query: 1   MAPALYFRPCISPPSTNWSHPKMLVNPLNAIPKIYXXXXXXXXXXXLEVVAKGMLSQRKF 60
           M+ A+ F+P +S PS+N S  K+  N +N   KI              VV  GML+ RKF
Sbjct: 1   MSQAVIFKPFVSVPSSNHSQRKLQNNIINVGVKI---------QNRFRVVCMGMLAPRKF 51

Query: 61  MQKRRKVEVFKDAADEADQKNWRGVMKQIEETGSAVAVLKSKRITQNQDLPKDLVLGTLV 120
           +QKRRK+EVFKDAADE DQK WRG+M +IE TGSAV VL+  +   +Q LP+DLVLGTLV
Sbjct: 52  LQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLV 111

Query: 121 RFQQLKKWNLVSEV 134
           RF+QLKKWNLVSE+
Sbjct: 112 RFKQLKKWNLVSEI 125


>AT3G59040.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:21821495-21823919 REVERSE
          Length = 590

 Score =  128 bits (322), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 72/88 (81%)

Query: 47  LEVVAKGMLSQRKFMQKRRKVEVFKDAADEADQKNWRGVMKQIEETGSAVAVLKSKRITQ 106
             VV  GML+ RKF+QKRRK+EVFKDAADE DQK WRG+M +IE TGSAV VL+  +   
Sbjct: 45  FRVVCMGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDG 104

Query: 107 NQDLPKDLVLGTLVRFQQLKKWNLVSEV 134
           +Q LP+DLVLGTLVRF+QLKKWNLVSE+
Sbjct: 105 DQGLPRDLVLGTLVRFKQLKKWNLVSEI 132