Jatropha Genome Database

JcCA0147671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.20 + phase: 0 
         (236 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23250.1 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   296   7e-81
AT5G23250.2 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   295   2e-80
AT5G08300.1 | Symbols:  | succinyl-CoA ligase (GDP-forming) alph...   292   1e-79

>AT5G23250.1 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:7830460-7832491 FORWARD
          Length = 341

 Score =  296 bits (758), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 149/175 (85%)

Query: 31  HARQYXXXXXXXXXVFVDKNTRLICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 90
            +R +         VFVDKNTR+ICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct: 33  QSRSFGTTPPPPAAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 92

Query: 91  LGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRV 150
           LGLPVFNTVAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRV
Sbjct: 93  LGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRV 152

Query: 151 KAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 205
           KAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 153 KAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 207


>AT5G23250.2 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:7830460-7832265 FORWARD
          Length = 297

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 149/175 (85%)

Query: 31  HARQYXXXXXXXXXVFVDKNTRLICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 90
            +R +         VFVDKNTR+ICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct: 33  QSRSFGTTPPPPAAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 92

Query: 91  LGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRV 150
           LGLPVFNTVAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRV
Sbjct: 93  LGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRV 152

Query: 151 KAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 205
           KAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 153 KAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 207


>AT5G08300.1 | Symbols:  | succinyl-CoA ligase (GDP-forming)
           alpha-chain, mitochondrial, putative / succinyl-CoA
           synthetase, alpha chain, putative / SCS-alpha, putative
           | chr5:2667579-2669672 FORWARD
          Length = 347

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/176 (79%), Positives = 148/176 (84%)

Query: 30  NHARQYXXXXXXXXXVFVDKNTRLICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE 89
             +R +         VFVDKNTR++CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTE
Sbjct: 37  TQSRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTE 96

Query: 90  HLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVR 149
           HLGLPVFN+VAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVR
Sbjct: 97  HLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVR 156

Query: 150 VKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 205
           VK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAV
Sbjct: 157 VKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 212