Jatropha Genome Database

JcCA0147561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147561.20 - phase: 0 
         (203 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11680.1 | Symbols:  | unknown protein | chr5:3759463-3760634...   320   4e-88

>AT5G11680.1 | Symbols:  | unknown protein | chr5:3759463-3760634
           FORWARD
          Length = 207

 Score =  320 bits (819), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 171/206 (83%), Gaps = 6/206 (2%)

Query: 1   MALNPQLFQNGLPVPFTNEIFVLSRDGVEFEIDKIPGSHGGHVKAKGVIYLSNVRLVFVA 60
           MALNPQL  NG+PVPF NE+FVL RDGVEFE+DKIPG HGGHVKAKGVIYLSN+R+VFV+
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query: 61  HKPVGAFTAFDMPLLYIHGEKFNQPIFFCNNISGLVEPVVPENENGALYSTHSFKILFKE 120
            KPV  F AFDMPLLYIH EKFNQPIF CNNI+G VEPVVPENE+ ALYSTHSFKILFKE
Sbjct: 61  SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKE 120

Query: 121 GGCGTFIPIFFNLISSVRQNNQ------PTPGMGPQMDPLRAAQTPVDEMMRHAYVDPND 174
           GGCGTF+P+F NLISSVRQ N+            P +DPL+AAQTPVDEMMRHAYVDPND
Sbjct: 121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPND 180

Query: 175 PTRIFLQQPTPESELRRRTYQLSPVE 200
           PTRI+LQQP+ ES+LRRR Y     E
Sbjct: 181 PTRIYLQQPSGESQLRRRAYHSGAAE 206