Jatropha Genome Database

JcCA0147251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.30 - phase: 0 /TE/partial
         (84 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUP...   145   6e-36
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOP...    98   9e-22
AT4G35050.1 | Symbols: MSI3, NFC3 | MSI3 (MULTICOPY SUPPRESSOR O...    89   6e-19
AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FV...    52   8e-08
AT4G29730.1 | Symbols: NFC5, MSI5 | NFC5 (Nucleosome/chromatin a...    49   5e-07

>AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY
           SUPRESSOR OF IRA1); protein binding |
           chr5:23556112-23557994 FORWARD
          Length = 424

 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/84 (83%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RIDEEQT EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVI+SVAEDNILQ
Sbjct: 342 LMVWDL-SRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400

Query: 61  IWQMEENIYHDEDDMPGDESTKGS 84
           IWQM ENIYHDEDD PG+E +K S
Sbjct: 401 IWQMAENIYHDEDDAPGEEPSKAS 424


>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOPY
           SUPPRESSOR OF IRA1 2) | chr2:7281615-7283583 REVERSE
          Length = 415

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 57/76 (75%), Gaps = 3/76 (3%)

Query: 1   LLTWSFFCRIDEEQ--TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNI 58
           L+ W    R+ EEQ     DAEDGPPELLF HGGH +KISDF+WN  E WVIASVAEDN 
Sbjct: 329 LMVWDL-NRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNS 387

Query: 59  LQIWQMEENIYHDEDD 74
           LQ+WQM E+IY DE+D
Sbjct: 388 LQVWQMAESIYRDEED 403


>AT4G35050.1 | Symbols: MSI3, NFC3 | MSI3 (MULTICOPY SUPPRESSOR OF
           IRA1 3); protein binding | chr4:16682752-16684751
           REVERSE
          Length = 424

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 1   LLTWSFFCRIDEEQTPE-DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNIL 59
           L+ W      DE+   E DAEDGPPELLF HGGH +KISDF+WN  E WVI+SVAEDN L
Sbjct: 330 LMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSL 389

Query: 60  QIWQMEENIYH 70
           Q+WQM E+IY 
Sbjct: 390 QVWQMAESIYR 400


>AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE;
           metal ion binding | chr2:8456006-8459235 FORWARD
          Length = 507

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 19  AEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIYHD 71
           A   P  L F H GH  K+ DF WN  + W I SV++D         LQIW+M + IY  
Sbjct: 426 AAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRP 485

Query: 72  EDDM 75
           E+++
Sbjct: 486 EEEV 489


>AT4G29730.1 | Symbols: NFC5, MSI5 | NFC5 (Nucleosome/chromatin
           assembly factor group C 5) | chr4:14559255-14562522
           REVERSE
          Length = 487

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 17  EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIY 69
           E A   P  L F H GH  K+ DF W+    W I SV+++         LQIW+M + IY
Sbjct: 404 ERATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIY 463

Query: 70  HDEDDM 75
             ED++
Sbjct: 464 RPEDEV 469