Jatropha Genome Database

JcCA0147181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147181.10 + phase: 0 
         (408 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00770.1 | Symbols:  | unknown protein | chr4:331195-333050 F...   118   7e-27

>AT4G00770.1 | Symbols:  | unknown protein | chr4:331195-333050
           FORWARD
          Length = 440

 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 187/417 (44%), Gaps = 91/417 (21%)

Query: 14  FKKRMLKDFLVDDLHTCSSTGFKSIPTKPADSSIQTVFQNDLSTGKLFRSRSTTMFAFHS 73
            + RMLKD L++D ++CSS GFKSIP +           + L+   +   R  +  A  +
Sbjct: 3   LRSRMLKDCLLEDSNSCSSNGFKSIPRR-----------HPLNPFPMIPKRKQSN-ALQA 50

Query: 74  VINALKNFQFTSVK-APS-IFPXXXXXXXXXXXXXXXXDTERASESKLESEVKITVT-IK 130
           VINA+KN    ++K APS I P                    A+++K E++  ITV  +K
Sbjct: 51  VINAIKNLHSNTIKSAPSGILPRSLSRRL-------------ATKNKAENQASITVIRVK 97

Query: 131 DIIRWKSFRDLMEEKSPPLDLAXXXXXXXXXXXXXXXXXXXXXNGSSWCDSDFTSEYLP- 189
           DI+RW S +DL E+ S                           + SSW D DFTSE+LP 
Sbjct: 98  DIVRWHSSKDLHEDIS---HFEPHQYTTKNTTTTTGSSTTSGTSCSSWSDLDFTSEFLPS 154

Query: 190 FWNGNSEEYGENEAMEVGKKDLPCVGE----ATIEAEKIVGPKAE---EKQLSSPISVID 242
            W  N EE GE +++   K +L CVGE    A I A+  VGP+     EK+ +SP+SV +
Sbjct: 155 SWGSNVEECGEKQSV---KNNLHCVGEDSCTAVILADTEVGPEENLQCEKEHNSPVSVFE 211

Query: 243 IEFEG-DEDSSSIYDESNANVESK-----------------YPFNLEKWMAVXXXX---- 280
           I+ E  DE S S + +   NVE                    PFNL++W ++        
Sbjct: 212 IQHEEYDETSDSSFSQCLDNVERTKQKLMQTIQRFESLANISPFNLDEWGSMDEASCMEG 271

Query: 281 ---------------XXXXXXXXXXXXXXXXXAWQLLNYFKQTSS--MKEERLVFDFFRE 323
                                           A QL N  K+  +  + EE L+ D+FR+
Sbjct: 272 GQETDTKYDDDENCDTVDRESEDEYNDEVEEKAAQLWNRVKERHAIWIHEEHLIMDYFRD 331

Query: 324 ELCRKT---YETKNEGFECEMLISRVKEWING--EDRMWVGG--ENKEACIREMERQ 373
           EL ++T   +ET++  FE   L+   K W+ G  E  +  G   + ++AC RE+ER+
Sbjct: 332 ELMQRTNSFHETQH--FE-NQLVCEAKGWLQGKRESELERGTSEQRRQACAREIERR 385