Jatropha Genome Database

JcCA0147051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147051.10 + phase: 1 /partial
         (133 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINES...   103   4e-23

>AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINESIN
            2); ATP binding / microtubule motor |
            chr3:6578047-6590106 FORWARD
          Length = 2771

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 4/135 (2%)

Query: 1    LAHYRSSIGKSPYIDFDGEQQLMNKLKETEDDRVQIAQRLFGLCTSVLKVAGIT-KPVSN 59
            LA YR+S  K+P+ +FD   QL  KLKETE+DR+Q+AQ L  LCTS+LK AG+T +  ++
Sbjct: 2639 LAFYRASSVKNPHSNFDKTHQLSTKLKETEEDRMQLAQELLSLCTSILKAAGVTGEDFTD 2698

Query: 60   VTPAAAEEALEQMKSKLTSLERECQDLTIKNRITTEKNRLLEVMAQASPVNSRIDENCQT 119
            + P  AEEALEQ+K+KL  LE E     +K +  + ++R  E    + P   R     Q+
Sbjct: 2699 INPEVAEEALEQLKTKLGLLESEVHHFRLKGKAKSRRSRNPERKMPSMPSPRR--SWSQS 2756

Query: 120  PKR-SQTSFLSALDR 133
            P+  SQ  F S+LDR
Sbjct: 2757 PRSMSQVPFFSSLDR 2771