Jatropha Genome Database

JcCA0147021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147021.20 + phase: 0 
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...   169   1e-42
AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...   168   1e-42
AT1G07270.1 | Symbols:  | cell division control protein CDC6b, p...   160   4e-40

>AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 508

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 123/191 (64%), Gaps = 33/191 (17%)

Query: 1   MPSIAGRNSSPCKEITEIVPSNDESA---------TPQKRKLRSNAMA-------VQDSP 44
           MP+IAG +SSP K +   V S  ES          T +KRKL S++ A       +  + 
Sbjct: 1   MPAIAGPSSSPQKHV---VGSRSESIGGVRSAEVNTSRKRKLISDSAAEVSATVVLPVNS 57

Query: 45  ISSPVKWKSPRRSLPSGPNTPRNEI--------ENACKSVTKELSNDITNKSSWNPRDME 96
           IS+P+KWKSPRR   S P T   EI        EN   SV  E+      KS WNP+D E
Sbjct: 58  ISTPMKWKSPRRCAVSIPKTSDEEIKEDSNEKLENPVISVCLEV------KSKWNPKDDE 111

Query: 97  QISAVKEALHVSTAPSTVVCREDEQKRVFEFCKTCIEQEKAGSLYVCGCPGTGKSLSMEK 156
           Q+ AVKEALHVS APSTVVCREDEQ+RVFEF K C+EQ+KAGSLY+CGCPGTGKSLSMEK
Sbjct: 112 QMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSLYICGCPGTGKSLSMEK 171

Query: 157 VKQQLIDWSKE 167
           V+ Q  +W+K+
Sbjct: 172 VRLQAEEWAKQ 182


>AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 539

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 123/191 (64%), Gaps = 33/191 (17%)

Query: 1   MPSIAGRNSSPCKEITEIVPSNDESA---------TPQKRKLRSNAMA-------VQDSP 44
           MP+IAG +SSP K +   V S  ES          T +KRKL S++ A       +  + 
Sbjct: 1   MPAIAGPSSSPQKHV---VGSRSESIGGVRSAEVNTSRKRKLISDSAAEVSATVVLPVNS 57

Query: 45  ISSPVKWKSPRRSLPSGPNTPRNEI--------ENACKSVTKELSNDITNKSSWNPRDME 96
           IS+P+KWKSPRR   S P T   EI        EN   SV  E+      KS WNP+D E
Sbjct: 58  ISTPMKWKSPRRCAVSIPKTSDEEIKEDSNEKLENPVISVCLEV------KSKWNPKDDE 111

Query: 97  QISAVKEALHVSTAPSTVVCREDEQKRVFEFCKTCIEQEKAGSLYVCGCPGTGKSLSMEK 156
           Q+ AVKEALHVS APSTVVCREDEQ+RVFEF K C+EQ+KAGSLY+CGCPGTGKSLSMEK
Sbjct: 112 QMKAVKEALHVSKAPSTVVCREDEQRRVFEFVKGCMEQKKAGSLYICGCPGTGKSLSMEK 171

Query: 157 VKQQLIDWSKE 167
           V+ Q  +W+K+
Sbjct: 172 VRLQAEEWAKQ 182


>AT1G07270.1 | Symbols:  | cell division control protein CDC6b,
           putative (CDC6b) | chr1:2229757-2232897 REVERSE
          Length = 505

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 120/182 (65%), Gaps = 18/182 (9%)

Query: 1   MPSIAGRNSSPCKEITEIVPS----NDESAT---PQKRKLRSNAMAVQDSPISSPVKWKS 53
           MP+ AG + S  K I  I  +    + ESA    P+KRK+RS++ AV  + +S+P K KS
Sbjct: 1   MPTNAGTSLSSYKHIVAIGTTVKSESLESAAYEIPRKRKMRSDSAAVSGNSVSTPKKLKS 60

Query: 54  PRRSLPSG-PNTPRNEIENACKS-------VTKELSNDITNKSSWNPRDMEQISAVKEAL 105
               LPS  PN   +E E    S       V   +S+ +  KS W+PRD EQ+ AVKEAL
Sbjct: 61  ---HLPSSVPNPGMSEKEVVEDSNEILRYPVNLAVSDCLGTKSKWSPRDEEQMRAVKEAL 117

Query: 106 HVSTAPSTVVCREDEQKRVFEFCKTCIEQEKAGSLYVCGCPGTGKSLSMEKVKQQLIDWS 165
           HVS APST++CREDEQ R+FEF K CI+Q+KAGSLY+CGCPGTGKSLSMEKV QQ+ DWS
Sbjct: 118 HVSKAPSTILCREDEQIRIFEFVKGCIDQQKAGSLYICGCPGTGKSLSMEKVVQQVGDWS 177

Query: 166 KE 167
            +
Sbjct: 178 TQ 179