Jatropha Genome Database
- JcCA0146861.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0146861.10 - phase: 0
(366 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 227 7e-60
AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcript... 223 1e-58
AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1); tr... 223 2e-58
AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 181 6e-46
AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 157 1e-38
AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 124 9e-29
AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type) f... 123 2e-28
AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type) f... 115 3e-26
AT1G28050.1 | Symbols: | zinc finger (B-box type) family protei... 78 1e-14
AT1G78600.1 | Symbols: LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC F... 77 2e-14
AT4G38960.1 | Symbols: | zinc finger (B-box type) family protei... 75 9e-14
AT2G47890.1 | Symbols: | zinc finger (B-box type) family protei... 74 1e-13
AT2G21320.1 | Symbols: | zinc finger (B-box type) family protei... 74 1e-13
AT2G33500.1 | Symbols: | zinc finger (B-box type) family protei... 72 6e-13
AT2G33500.2 | Symbols: | zinc finger (B-box type) family protei... 72 6e-13
AT2G47890.2 | Symbols: | zinc finger (B-box type) family protei... 72 8e-13
AT1G06040.1 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /... 71 1e-12
AT1G75540.1 | Symbols: STH2 | STH2 (SALT TOLERANCE HOMOLOG2); tr... 71 1e-12
AT2G31380.1 | Symbols: STH | STH; protein domain specific bindin... 70 2e-12
AT1G06040.2 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /... 69 6e-12
AT1G73870.1 | Symbols: | zinc finger (B-box type) family protei... 67 1e-11
AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 67 2e-11
AT5G48250.1 | Symbols: | zinc finger (B-box type) family protei... 67 2e-11
AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 67 2e-11
AT4G39070.1 | Symbols: | zinc finger (B-box type) family protei... 67 2e-11
AT1G25440.1 | Symbols: | zinc finger (B-box type) family protei... 67 3e-11
AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 66 4e-11
AT1G68520.1 | Symbols: | zinc finger (B-box type) family protei... 65 5e-11
AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 64 1e-10
AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 64 1e-10
AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 64 1e-10
AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 64 1e-10
AT1G68190.1 | Symbols: | zinc finger (B-box type) family protei... 64 1e-10
AT1G07050.1 | Symbols: | CONSTANS-like protein-related | chr1:2... 64 1e-10
AT1G49130.1 | Symbols: | zinc finger (B-box type) family protei... 63 2e-10
AT1G49130.2 | Symbols: | zinc finger (B-box type) family protei... 63 3e-10
AT3G21880.1 | Symbols: | zinc finger (B-box type) family protei... 62 6e-10
AT4G15250.1 | Symbols: | zinc finger (B-box type) family protei... 59 3e-09
AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB E... 57 2e-08
AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 57 2e-08
AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS PSEUDO-R... 57 2e-08
AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 56 4e-08
AT1G04500.1 | Symbols: | zinc finger CONSTANS-related | chr1:12... 56 4e-08
AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknow... 55 5e-08
AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL... 55 7e-08
AT4G15248.1 | Symbols: | zinc ion binding | chr4:8708881-870923... 55 9e-08
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 54 1e-07
AT3G21890.1 | Symbols: | zinc finger (B-box type) family protei... 54 2e-07
AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-R... 53 3e-07
AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 3e-07
AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 3e-07
AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 53 3e-07
AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 4e-07
AT2G46670.1 | Symbols: | pseudo-response regulator, putative / ... 51 1e-06
AT5G54470.1 | Symbols: | zinc finger (B-box type) family protei... 51 1e-06
AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 1e-06
AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 1e-06
AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2)... 51 2e-06
AT4G10240.1 | Symbols: | zinc finger (B-box type) family protei... 50 2e-06
AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 50 2e-06
AT4G27310.1 | Symbols: | zinc finger (B-box type) family protei... 49 7e-06
>AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 373
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/361 (39%), Positives = 197/361 (54%), Gaps = 24/361 (6%)
Query: 14 NWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFT 73
N AR CD C + CT+YCHADSAYLC +CD VH+AN +A +HKRV VC +CE APAAF
Sbjct: 15 NRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFL 74
Query: 74 CQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEESQAPLLHTENDA 133
C+ D A LC CD E+HSANPLA RH RVPI PISG + +S TT +S+ + E
Sbjct: 75 CEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRL 134
Query: 134 MANKIVHELEEDQTD-----SWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIKYNSCTNYH 188
+ ++ E EE D SW N G + D+YLN + YNS +Y
Sbjct: 135 VVDQ--EEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLF---SDEYLNLVDYNSSMDYK 189
Query: 189 CQDQINQ-QQLSSAHRGDICGDSIVPVQSFXXXXXXXXXXXXXXXXTTFIDSGYGASKAS 247
+ +Q QQ S + GD +VP++ + YG+S
Sbjct: 190 FTGEYSQHQQNCSVPQTSYGGDRVVPLK-----LEESRGHQCHNQQNFQFNIKYGSSGTH 244
Query: 248 FVNTTSNSQKLHFQNQVPLSFTNAGYLLTSSNVPNSYSRFSKRTGDLLPNPS--LLVPVQ 305
+ + S + + + + +T+++ P R K T + P+P+ ++ Q
Sbjct: 245 YNDNGSINHNAYISSMETGVVPESTACVTTASHP----RTPKGTVEQQPDPASQMITVTQ 300
Query: 306 FTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFP 365
+PM+REA+VLRYREKR+ RKFEK IRY +RKA AE RPRV GRFA K+++E E +Q F
Sbjct: 301 LSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFA-KREIEAE-EQGFN 358
Query: 366 T 366
T
Sbjct: 359 T 359
>AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcription
factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 347
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 190/352 (53%), Gaps = 30/352 (8%)
Query: 15 WARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTC 74
WAR+CD C +A CT+YC ADSAYLC CD VHAAN +A +H+RV VC +CE+APAAF C
Sbjct: 12 WARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLC 71
Query: 75 QPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEESQAPLLHTENDAM 134
+ DAA LC CD EIHSANPLA RH RVPI P+S AN+ S+ E+ A +ND
Sbjct: 72 KADAASLCTACDAEIHSANPLARRHQRVPILPLS--ANSCSSMAPSETDA-----DNDE- 123
Query: 135 ANKIVHELEEDQTDSWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIKYNSCTNYHCQDQIN 194
++ + SW N GF + +YL+ + Y+S + +Q
Sbjct: 124 --------DDREVASWLLPNPGKNIGNQNNGFLFGV---EYLDLVDYSSSMD----NQFE 168
Query: 195 QQQLSSAHRGDICGDSIVPVQSFXXXXXXXXXXXXXXXXTTFIDSGYGASKASFVNTTSN 254
Q + R GD +VP+Q + YG S + N S
Sbjct: 169 DNQYTHYQRS-FGGDGVVPLQ-----VEESTSHLQQSQQNFQLGINYGFSSGAHYNNNS- 221
Query: 255 SQKLHFQNQVPLSFTNAGYLLTSSNVPNSYSRFSKRTGDLLPNPSLLVPVQFTPMNREAK 314
+ L+ V + T+S++ + R +K T D L P V Q TPM REA+
Sbjct: 222 LKDLNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREAR 281
Query: 315 VLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
VLRYREK++ RKF+K IRY +RKA AE RPR+KGRFA++ + E E +++F T
Sbjct: 282 VLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFST 333
>AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding |
chr5:5176297-5177473 REVERSE
Length = 355
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 201/371 (54%), Gaps = 35/371 (9%)
Query: 1 MLKINSDGYRYLTNWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVW 60
MLK+ S NWA++CD C +A CT+YC ADSAYLC++CD VHAAN LA +H+RV
Sbjct: 1 MLKVES-------NWAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVR 53
Query: 61 VCTACENAPAAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLE 120
VC +CE APAAF C+ DAA LC CD EIHSANPLA RH RVPI PIS + SST
Sbjct: 54 VCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYS-YSSTATNH 112
Query: 121 ESQAPLLHTENDAMANKIVHELEEDQTDSWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIK 180
+ + EN + + + +E + SW N D++LN +
Sbjct: 113 SCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNG----FSIGDEFLNLVD 168
Query: 181 YNSCTNYHCQDQINQQQLS-SAHRGDICGDSIVPVQSFXXXXXXXXXXXXXXXXTTFIDS 239
Y+S ++ DQ NQ QL + + D +VP+Q I+
Sbjct: 169 YSS-SDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ----IEVSKGMYQEQQNFQLSINC 223
Query: 240 G-YGASKASFVNTTSNSQKLHFQNQVPLSFTNAGYL--LTSSNVPNSYSRFSKRTGDLLP 296
G +GA + +SN H N +S + G + T+S+ S R K D P
Sbjct: 224 GSWGALR------SSNGSLSHMVN---VSSMDLGVVPESTTSDATVSNPRSPKAVTDQPP 274
Query: 297 NPSLLVPVQ-FTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
P P Q +P +REA+VLRYREK++ RKFEK IRY +RKA AE RPR+KGRFA+KKD
Sbjct: 275 YP----PAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330
Query: 356 MELELDQMFPT 366
++ E +Q F T
Sbjct: 331 VDEEANQAFST 341
>AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567946 FORWARD
Length = 294
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 171/357 (47%), Gaps = 97/357 (27%)
Query: 12 LTNWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAA 71
+ + +R CD+C + TL+C AD+A+LC +CD +H AN LA +H+RVW+C CE APA
Sbjct: 1 MASSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAH 60
Query: 72 FTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPI---SGLANTSSTTCLEESQAPLLH 128
TC+ DAA LC+ CD +IHSANPL+ RH RVPITP G A ++S++
Sbjct: 61 VTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSV---------- 110
Query: 129 TENDAMANKIVHELEEDQTDSWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIKYNSCTNYH 188
V E D T SW ++ + + Y
Sbjct: 111 --------NFVDEDGGDVTASWLLAKEGI-------------EITNLFSDLDYPKI---- 145
Query: 189 CQDQINQQQLSSAHRGDICGDSIVPVQSFXXXXXXXXXXXXXXXXTTFIDSGY-----GA 243
++ ++ SS + D +VPVQ+ F++ Y A
Sbjct: 146 ---EVTSEENSSGN------DGVVPVQN-----------------KLFLNEDYFNFDLSA 179
Query: 244 SKAS-----FVNTTSNSQKLHFQNQVPLSFTNAGYLLTSSNVPNSYSRFSKRTGDLLPNP 298
SK S F+N T +++ + VPL VP S ++ T P
Sbjct: 180 SKISQQGFNFINQTVSTRTI----DVPL-------------VPESGGVTAEMTNTETP-- 220
Query: 299 SLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
VQ +P REA+VLRYREKR+ RKFEK IRY +RKA AE RPR+KGRFA++ D
Sbjct: 221 ----AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171873-5172697 REVERSE
Length = 274
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Query: 14 NWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFT 73
N AR CD C + CT+YCHADSAYLC +CD VH+AN +A +HKRV VC +CE APAAF
Sbjct: 15 NRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFL 74
Query: 74 CQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEESQAPLLHTENDA 133
C+ D A LC CD E+HSANPLA RH RVPI PISG + +S TT +S+ + E
Sbjct: 75 CEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRL 134
Query: 134 MANKIVHELEEDQTD-----SWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIKYNSCTNYH 188
+ ++ E EE D SW N G + D+YLN + YNS +Y
Sbjct: 135 VVDQ--EEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLF---SDEYLNLVDYNSSMDYK 189
Query: 189 CQDQINQ-QQLSSAHRGDICGDSIVPVQ 215
+ +Q QQ S + GD +VP++
Sbjct: 190 FTGEYSQHQQNCSVPQTSYGGDRVVPLK 217
>AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567621 FORWARD
Length = 220
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 68/92 (73%)
Query: 16 ARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQ 75
+R CD+C + TL+C AD+A+LC +CD +H AN LA +H+RVW+C CE APA TC+
Sbjct: 5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCK 64
Query: 76 PDAAKLCINCDIEIHSANPLAGRHIRVPITPI 107
DAA LC+ CD +IHSANPL+ RH RVPITP
Sbjct: 65 ADAAALCVTCDRDIHSANPLSRRHERVPITPF 96
>AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 406
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD+C +A LYC D+A+LC +CD VHAAN LA +H RVW+C CE APA TC+ DA
Sbjct: 50 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 109
Query: 79 AKLCINCDIEIHSANPLAGRHIRVPITPI 107
A LC+ CD +IHSANPLA RH RVP+TP
Sbjct: 110 AALCVTCDRDIHSANPLARRHERVPVTPF 138
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 297 NPSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
+P V T REA+V+RYREKR+ RKFEK IRY +RKA AE RPR+KGRFA++ D
Sbjct: 325 DPGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 383
>AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 355
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 16 ARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQ 75
ARSCDAC + ++C DSA+LC CD +H+ +H+RVWVC CE APAA TC+
Sbjct: 19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCK 74
Query: 76 PDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEESQAPLLHTENDAMA 135
DAA LC++CD +IHSANPLA RH RVP+ A T+ S +L +
Sbjct: 75 ADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTTVDL 134
Query: 136 NKIVHELEEDQTDSWXXXXXXXXXXQTNTGFTYIEDVDQYLNHIKYNSCTNYHCQDQINQ 195
+ ++ W + G ++ ++ ++ ++ + N
Sbjct: 135 TAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFM-FSDFDRLIDFEFPNSFNH 193
Query: 196 QQLSSAHRGDICGDSIVPVQS 216
H+ + GDS+VPVQ+
Sbjct: 194 ------HQNNAGGDSLVPVQT 208
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMF 364
Q + M+REA+VLRYREKR+ RKFEK IRY +RKA AE+RPR+KGRFA++ E E D +F
Sbjct: 279 QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKR--TETENDDIF 336
>AT1G28050.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:9775768-9777657 REVERSE
Length = 433
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C L+C AD+A LC CD+ VH AN L+ KH R +C C N P + C D
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68
Query: 79 AKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCL-----------EESQAPLL 127
LC CD ++H + ++ H+R + SG + L EE+Q P++
Sbjct: 69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGLDLEQGRKDEENQVPMM 128
Query: 128 HTENDAMANKIVHELEEDQTDSW 150
D Q DSW
Sbjct: 129 AMMMDNFGM---------QLDSW 142
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 310 NREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFAR 352
NR + RY+EKR+ R+++K IRY +RKA A+ R RV+GRF +
Sbjct: 384 NRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426
>AT1G78600.1 | Symbols: LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC
FINGER PROTEIN 1); transcription factor/ zinc ion
binding | chr1:29567370-29568662 FORWARD
Length = 299
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV---------CTACENAP 69
C+ C AA T+ C AD A LC CDE +HAAN LA KH+RV + C C+ A
Sbjct: 5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEAS 64
Query: 70 AAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPI 107
F C D A LC CD+ IH+ NP H R +T I
Sbjct: 65 GFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGI 102
>AT4G38960.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:18161576-18163045 FORWARD
Length = 183
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV--------CTACENAPA 70
CDAC A ++C AD A LC CDE VH N LA +H RV + C CENAPA
Sbjct: 5 CDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICENAPA 64
Query: 71 AFTCQPDAAKLCINCDIEIH 90
F C+ D + LC+ CD+ +H
Sbjct: 65 FFYCEIDGSSLCLQCDMVVH 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 61 VCTACENAPAAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLE 120
+C ACENA A C D A LC CD ++H N LA RH+RV GLA S+ C +
Sbjct: 4 LCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRV------GLAEPSNAPCCD 57
>AT2G47890.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609476 FORWARD
Length = 332
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 17 RSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQP 76
R CD C ++ +YC ADSA LC CD+ VH AN L KH R +C +C +P++ C+
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70
Query: 77 DAAKLCINCDIEIHSANPLAGRHIRVPITPISG 109
+ + LC NCD + H+A+ + H R P +G
Sbjct: 71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 9/66 (13%)
Query: 299 SLLVPV---------QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGR 349
+++VPV + + R + + RY+EK+++R++EK IRY +RK AE+R R++GR
Sbjct: 266 TVMVPVITSTRSMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGR 325
Query: 350 FARKKD 355
FA+ D
Sbjct: 326 FAKAAD 331
>AT2G21320.1 | Symbols: | zinc finger (B-box type) family protein
| chr2:9126502-9127652 FORWARD
Length = 172
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV--------CTACENAPA 70
CDAC +A ++C AD A LC +CDE VH N LA +H RV + C CENAPA
Sbjct: 5 CDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPA 64
Query: 71 AFTCQPDAAKLCINCDIEIH 90
F C+ D + LC+ CD+ +H
Sbjct: 65 FFYCEIDGSSLCLQCDMVVH 84
>AT2G33500.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 402
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 18 SCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPD 77
+C+ C L+C AD+A LC CD++VH+AN L+ KH R +C C P + C D
Sbjct: 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTD 70
Query: 78 AAKLCINCDIEIHSANPLAGRHIRVPITPISG 109
LC CD ++H + + H R + SG
Sbjct: 71 NLVLCQECDWDVHGSCSSSATHERSAVEGFSG 102
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 310 NREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
NR+ + RY+EK++ R+++K IRY TRKA AE R RVKGRF + D
Sbjct: 356 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401
>AT2G33500.2 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 401
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 18 SCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPD 77
+C+ C L+C AD+A LC CD++VH+AN L+ KH R +C C P + C D
Sbjct: 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTD 70
Query: 78 AAKLCINCDIEIHSANPLAGRHIRVPITPISG 109
LC CD ++H + + H R + SG
Sbjct: 71 NLVLCQECDWDVHGSCSSSATHERSAVEGFSG 102
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 310 NREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
NR+ + RY+EK++ R+++K IRY TRKA AE R RVKGRF + D
Sbjct: 355 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 400
>AT2G47890.2 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609036 FORWARD
Length = 237
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 17 RSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQP 76
R CD C ++ +YC ADSA LC CD+ VH AN L KH R +C +C +P++ C+
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70
Query: 77 DAAKLCINCDIEIHSANPLAGRHIRVPITPISG 109
+ + LC NCD + H+A+ + H R P +G
Sbjct: 71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101
>AT1G06040.1 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /
protein binding / transcription factor/ zinc ion binding
| chr1:1828662-1829659 REVERSE
Length = 248
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV---------CTACENAP 69
CD C AP T+ C AD A LC CD +HAAN LA KH+R+ + C C+
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 70 AAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEE 121
A C D A LC +CD IH AN + H R T I +ST C +E
Sbjct: 65 AFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIK--VALTSTICSKE 114
>AT1G75540.1 | Symbols: STH2 | STH2 (SALT TOLERANCE HOMOLOG2);
transcription factor/ zinc ion binding |
chr1:28366059-28367398 FORWARD
Length = 331
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVW------------VCTACE 66
CD C +++C AD A LC CD VH AN LA KH R +C C+
Sbjct: 5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQ 64
Query: 67 NAPAAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSST 116
+ A CQ D A LC +CD IH+AN +H R +T + L+ TSS
Sbjct: 65 DKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVK-LSATSSV 113
>AT2G31380.1 | Symbols: STH | STH; protein domain specific binding /
transcription factor/ zinc ion binding |
chr2:13382150-13383302 FORWARD
Length = 238
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV---------CTACENAP 69
CD C AP TL C AD A LC CD VHAAN LA KH+R+++ C C
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKA 64
Query: 70 AAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEESQ 123
A C D A LC +CD H+ N + H R T I SST+C +E +
Sbjct: 65 AFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIR--VALSSTSCNQEVE 116
>AT1G06040.2 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /
protein binding / transcription factor/ zinc ion binding
| chr1:1828957-1829659 REVERSE
Length = 177
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWV---------CTACENAP 69
CD C AP T+ C AD A LC CD +HAAN LA KH+R+ + C C+
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 70 AAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSSTTCLEE 121
A C D A LC +CD IH AN + H R T I +ST C +E
Sbjct: 65 AFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIK--VALTSTICSKE 114
>AT1G73870.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:27779214-27780522 FORWARD
Length = 392
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA+VLRY+EKRR R F K+IRY RK NAE RPR+KGRF ++
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 16 ARSCDACCA-APCTLYCHADSAYLCNNCDEYVHAANSLALKHKRV 59
AR CDAC + + YC AD A+LC +CD +H+AN LA +H+RV
Sbjct: 19 ARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERV 63
>AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170763
FORWARD
Length = 435
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA VLRY+EKRR R F K+IRY RK NA+ RPR+KGRF R+
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425
>AT5G48250.1 | Symbols: | zinc finger (B-box type) family protein |
chr5:19561719-19563113 REVERSE
Length = 373
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +D+A LC +CD VH+AN+L+ +H R VC C PA+ C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDER 64
Query: 79 AKLCINCDIEIHSA--NPLAGRHIRVPITPISG 109
LC NCD H + H R I SG
Sbjct: 65 VSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSG 97
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
R V+RY+EK++ARKF+K++RYV+RK A+ R RVKGRF + + + D M PT
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA-YDYDPMSPT 370
>AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to
1506 proteins in 139 species: Archae - 0; Bacteria - 8;
Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0;
Other Eukaryotes - 318 (source: NCBI BLink). |
chr5:4632147-4633651 REVERSE
Length = 339
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 292 GDLLPNPSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFA 351
G+L P + + +REA +LRY+EKR+ R F K+IRY RK NAE RPRVKGRF
Sbjct: 275 GNLWAVPEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFV 334
Query: 352 RKKD 355
+++D
Sbjct: 335 KRED 338
>AT4G39070.1 | Symbols: | zinc finger (B-box type) family protein |
chr4:18205061-18206421 REVERSE
Length = 242
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVW----------VCTACENA 68
C C +++C AD A LCN CD +VH AN LA KH R +C C
Sbjct: 5 CAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGER 64
Query: 69 PAAFTCQPDAAKLCINCDIEIHSANPLAGRHIRVPITPISGLANTSS 115
A CQ D A LC CDI IH AN +H R +T + A+ S+
Sbjct: 65 RALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSA 111
>AT1G25440.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:8933939-8935284 REVERSE
Length = 417
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%)
Query: 306 FTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
F REA+V RYREKRR R F K+IRY RK NAE RPR+KGRF ++
Sbjct: 356 FGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 16 ARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTA 64
AR+CD+C YC AD A+LC +CD VH+AN LA +H+RV + TA
Sbjct: 14 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKTA 62
>AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 394
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA VLRY+EKRR R F K+IRY RK NA+ RPR+KGRF R+
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKGRFVRR 383
>AT1G68520.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:25709331-25710749 REVERSE
Length = 406
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%)
Query: 310 NREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA+V RYREKRR R F K+IRY RK NAE RPR+KGRF ++
Sbjct: 356 GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 16 ARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTA 64
AR+CD+C YC AD A+LC+ CD VH+AN LA +H+RV + +A
Sbjct: 14 ARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLKSA 62
>AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +D+A LC +CD VH+AN+L+ +H R VC C PA C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 79 AKLCINCDIEIH 90
LC NCD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
+ R V+RY+EK++ARKF+K++RY +RKA A+ R RVKGRF + + + D + PT
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA-YDYDPLTPT 369
>AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +D+A LC +CD VH+AN+L+ +H R VC C PA C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 79 AKLCINCDIEIH 90
LC NCD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
+ R V+RY+EK++ARKF+K++RY +RKA A+ R RVKGRF + + + D + PT
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA-YDYDPLTPT 369
>AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +D+A LC +CD VH+AN+L+ +H R VC C PA C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 79 AKLCINCDIEIH 90
LC NCD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
+ R V+RY+EK++ARKF+K++RY +RKA A+ R RVKGRF + + + D + PT
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA-YDYDPLTPT 369
>AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +D+A LC +CD VH+AN+L+ +H R VC C PA C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 79 AKLCINCDIEIH 90
LC NCD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDMELELDQMFPT 366
+ R V+RY+EK++ARKF+K++RY +RKA A+ R RVKGRF + + + D + PT
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA-YDYDPLTPT 369
>AT1G68190.1 | Symbols: | zinc finger (B-box type) family protein
| chr1:25559384-25561004 FORWARD
Length = 356
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 12 LTNWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAA 71
+ N R C+ C A +YC AD+A LC CD VH+ANSL+ +H R +C +C+N P
Sbjct: 7 IENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCV 66
Query: 72 FTCQPDAAKLCINCDIEIHSAN 93
C LC C+ + H
Sbjct: 67 VRCFDHKMFLCHGCNDKFHGGG 88
>AT1G07050.1 | Symbols: | CONSTANS-like protein-related |
chr1:2164327-2165133 REVERSE
Length = 195
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKK 354
M REA VLRY+EKR++R F K+IRY RK NA+ RPR KGRF +++
Sbjct: 149 MRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKRE 194
>AT1G49130.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175936 REVERSE
Length = 326
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA+V RYR+KR+ R FEK+IRY RK NA+ RPR+KGRF R+
Sbjct: 278 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 3 KINSDGYRYLTNWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRV 59
KI Y+ R+C+ C YC +D A+LC+ CDE VH+AN +A KH+RV
Sbjct: 12 KIMISKYQEDVKQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERV 68
>AT1G49130.2 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175811 REVERSE
Length = 319
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA+V RYR+KR+ R FEK+IRY RK NA+ RPR+KGRF R+
Sbjct: 271 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 17 RSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRV 59
R+C+ C YC +D A+LC+ CDE VH+AN +A KH+RV
Sbjct: 19 RACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERV 61
>AT3G21880.1 | Symbols: | zinc finger (B-box type) family protein |
chr3:7706748-7708093 FORWARD
Length = 364
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C + +YC +D A LC NCD +VH+AN L+ +H R +C C + PAA C +
Sbjct: 5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64
Query: 79 AKLCINCDIEIHSANPLAGRHIRVPITPISG 109
C C H +N H + P SG
Sbjct: 65 VSYCQGC--HWHESNCSELGHRVQSLNPFSG 93
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 234 TTFIDSGYGASKASFVNTTSNSQKLHFQNQVPLSFTNAGYL-----LTSSNVPNSYSRFS 288
++F S + KA + ++ Q+PLS G + +T N Y
Sbjct: 224 SSFTGSNFTVDKALEASPPGQQMNINTGLQLPLSPVLFGQIHPSLNITGENNAADYQDCG 283
Query: 289 KRTGDLLPNPSLLVPVQFT-PMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVK 347
G ++ + + P R LRY+EK+ R F KQIRY +RKA A+ R RVK
Sbjct: 284 MSPGFIMSEAPWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVK 343
Query: 348 GRFARKKD 355
GRF + D
Sbjct: 344 GRFVKAGD 351
>AT4G15250.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:8709942-8711106 REVERSE
Length = 330
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACENAPAAFTCQPDA 78
CD C +YC +DSA LC NCD VH+AN L+ +H R +C C P A C +
Sbjct: 5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64
Query: 79 AKLCINC 85
LC C
Sbjct: 65 VSLCQGC 71
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 302 VPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
V V F P R+ RY++K+ R F KQIRY +RKA A+ R RVKGRF + +
Sbjct: 267 VEVSFNPKLRDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSGE 320
>AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits
to 4734 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses -
0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 409
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDM 356
+ +P R+ K+ RY +KR R F K+I+Y RK A++RPRV+GRFA+ +
Sbjct: 304 KLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEF 355
>AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits
to 4729 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses -
0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDM 356
+ +P R+ K+ RY +KR R F K+I+Y RK A++RPRV+GRFA+ +
Sbjct: 305 KLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEF 356
>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component
response regulator | chr5:24675540-24678176 FORWARD
Length = 618
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
RE +L++R KR R F+K+IRYV RK AE RPRVKG+F RK
Sbjct: 533 REEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRK 575
>AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170294
FORWARD
Length = 424
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVK 347
REA VLRY+EKRR R F K+IRY RK NA+ RPR+K
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMK 419
>AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/
two-component response regulator |
chr5:24198215-24200502 REVERSE
Length = 495
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
REA ++++R KR+ R FEK++RY +RK AE RP VKG+F RK+D
Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKRD 486
>AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 409
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 15/58 (25%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVK---------------GRFARK 353
REA VLRY+EKRR R F K+IRY RK NA+ RPR+K GRF R+
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRR 398
>AT1G04500.1 | Symbols: | zinc finger CONSTANS-related |
chr1:1221757-1224235 REVERSE
Length = 386
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 295 LPNPSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKK 354
L +PS + + R+ K+ RY +KR R F K+I+Y RK A++RPRV+GRFA+
Sbjct: 272 LDDPSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKND 331
Query: 355 DM 356
+
Sbjct: 332 EF 333
>AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
flower, root; EXPRESSED DURING: petal differentiation
and expansion stage; CONTAINS InterPro DOMAIN/s: CCT
domain (InterPro:IPR010402); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41380.1);
Has 907 Blast hits to 907 proteins in 64 species: Archae
- 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882;
Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
| chr1:23682529-23684050 REVERSE
Length = 293
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDM 356
R+ K+ +YR KR R F K I+Y RK A+NRPRV+GRFAR ++
Sbjct: 192 RKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEV 237
>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component
response regulator | chr5:638283-641461 REVERSE
Length = 727
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
REA + ++R+KR+ R F K++RY +RK AE RPRV+G+F RK
Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRK 711
>AT4G15248.1 | Symbols: | zinc ion binding | chr4:8708881-8709234
FORWARD
Length = 117
Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 18 SCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTAC 65
SC+ C T+YC AD+A+LC CD +VH+AN LA +H R +CT C
Sbjct: 31 SCE-LCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTC 77
>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19232874-19234901 FORWARD
Length = 468
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFAR 352
+++ REA ++++R KR+ R F+K++RY +RK AE RPRVKG+F R
Sbjct: 411 RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 458
>AT3G21890.1 | Symbols: | zinc finger (B-box type) family protein
| chr3:7709298-7709663 REVERSE
Length = 121
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 23 CAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACE 66
C +++C ADSA+LC CD +VH AN LA +H R +CT+C+
Sbjct: 34 CDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQ 77
>AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator | chr5:8356204-8358873
REVERSE
Length = 667
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 309 MNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
+ REA + ++R KR+ R +EK++RY +RK AE RPR+KG+F R+
Sbjct: 616 LQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQ 660
>AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 307 TPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDME 357
T +R K+ RYR K+ R F ++I+Y RKA A+++PR++GRFA+ ++M+
Sbjct: 210 TSEDRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 307 TPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDME 357
T +R K+ RYR K+ R F ++I+Y RKA A+++PR++GRFA+ ++M+
Sbjct: 210 TSEDRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19233422-19234901 FORWARD
Length = 351
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFAR 352
REA ++++R KR+ R F+K++RY +RK AE RPRVKG+F R
Sbjct: 300 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 341
>AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G63820.1); Has 952 Blast hits to 949 proteins
in 72 species: Archae - 0; Bacteria - 0; Metazoa - 12;
Fungi - 2; Plants - 890; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink). | chr5:16562129-16563553
REVERSE
Length = 307
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDM 356
+++ R+ K+ +YR KR R F K I+Y RK A++RPR++GRFAR ++
Sbjct: 209 RYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEV 260
>AT2G46670.1 | Symbols: | pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative |
chr2:19164589-19165233 REVERSE
Length = 183
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFAR 352
REA ++++R KR+ R F+K++RY +RK AE RPRVKG+F R
Sbjct: 132 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 173
>AT5G54470.1 | Symbols: | zinc finger (B-box type) family protein
| chr5:22114584-22115315 REVERSE
Length = 215
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 17 RSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACEN 67
+ C+ CC +YC +D A LC +CD VH AN L KH R +C+AC++
Sbjct: 4 KKCELCCGVA-RMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQS 53
>AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21673683-21675469
FORWARD
Length = 264
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 289 KRTGDLLPNPSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKG 348
K L+ +P + V T +R K+ RY+ K+ R F ++I+Y RKA A+++PRV+G
Sbjct: 196 KLGAGLVQSPLDRIIVSCTSEDRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRG 255
Query: 349 RFARKKD 355
RFA+ ++
Sbjct: 256 RFAKTEE 262
>AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21674700-21675469
FORWARD
Length = 185
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 294 LLPNPSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARK 353
L+ +P + V T +R K+ RY+ K+ R F ++I+Y RKA A+++PRV+GRFA+
Sbjct: 122 LVQSPLDRIIVSCTSEDRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAKT 181
Query: 354 KD 355
++
Sbjct: 182 EE 183
>AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2);
transcription activator | chr3:4099223-4100277 FORWARD
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 311 REAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKD 355
R+ +++RY +K+ R F K I+YV RK A+ R RV+GRFAR D
Sbjct: 139 RKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNND 183
>AT4G10240.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:6368967-6369526 REVERSE
Length = 162
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 19 CDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVW---------------VCT 63
C+ C A + C +D A LC CD VH AN L +H RV +C
Sbjct: 5 CEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLCD 64
Query: 64 ACENAPAAFTCQPDAAKLCINCDIEIHSAN 93
C+ F C D A LC +CD IH+ N
Sbjct: 65 ICQERKGYFFCLEDRAMLCNDCDEAIHTCN 94
>AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
stem, leaf whorl, flower; EXPRESSED DURING: petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G41380.1); Has 918 Blast hits to 918 proteins
in 64 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes -
32 (source: NCBI BLink). | chr5:24151206-24153084
REVERSE
Length = 241
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 305 QFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDM 356
+++P ++ K+ +YR KR R F K+I+Y RK A++RPR++GRFAR ++
Sbjct: 157 KYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEI 208
>AT4G27310.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:13675853-13676616 FORWARD
Length = 223
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 ARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKRVWVCTACEN 67
+ CD C +YC +D A LC +CD VH AN L KH R +C+AC++
Sbjct: 2 GKKCDLCNGVA-RMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQS 52