Jatropha Genome Database

JcCA0146401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146401.10 - phase: 0 
         (206 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16780.1 | Symbols:  | 60S ribosomal protein L19 (RPL19B) | c...   327   4e-90
AT1G02780.1 | Symbols: emb2386 | emb2386 (embryo defective 2386)...   319   8e-88
AT4G02230.1 | Symbols:  | 60S ribosomal protein L19 (RPL19C) | c...   316   8e-87
AT4G16030.1 | Symbols:  | structural constituent of ribosome | c...    74   5e-14

>AT3G16780.1 | Symbols:  | 60S ribosomal protein L19 (RPL19B) |
           chr3:5708982-5710249 FORWARD
          Length = 209

 Score =  327 bits (837), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/208 (80%), Positives = 175/208 (84%), Gaps = 2/208 (0%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLK+QKRLAASV+KCGKGKVWLDPNE  +ISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQGP--GEKAPQAPAPQQTEGAKKSKK 206
           LAQGP  GE    A APQQ E  KK  K
Sbjct: 181 LAQGPGGGETTTPAGAPQQPEVTKKKSK 208


>AT1G02780.1 | Symbols: emb2386 | emb2386 (embryo defective 2386);
           structural constituent of ribosome | chr1:608120-609391
           REVERSE
          Length = 214

 Score =  319 bits (817), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 159/186 (85%), Positives = 168/186 (90%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLAASV+KCGKGKVWLDPNE ++ISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPG 186
           LA+GPG
Sbjct: 181 LAKGPG 186


>AT4G02230.1 | Symbols:  | 60S ribosomal protein L19 (RPL19C) |
           chr4:979391-980640 REVERSE
          Length = 208

 Score =  316 bits (809), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/208 (80%), Positives = 178/208 (85%), Gaps = 2/208 (0%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLA+SVLKCGK KVWLDPNE ++ISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPGEKAPQAPAPQQTE--GAKKSKK 206
           LA+GPG   P A  P QT    AKKSKK
Sbjct: 181 LAKGPGGDIPAAAPPAQTAEVPAKKSKK 208


>AT4G16030.1 | Symbols:  | structural constituent of ribosome |
           chr4:9083482-9084103 FORWARD
          Length = 114

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 68/139 (48%), Gaps = 33/139 (23%)

Query: 57  IHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKID 116
            HSRSRARR      K RH+GYGK   T EA                    K+  +KKID
Sbjct: 6   FHSRSRARR------KCRHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNKKID 57

Query: 117 KHMY-HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIA 175
           K +Y HDM+MKVKG V+KNK VLMES+HKS                       SRERK +
Sbjct: 58  KLVYYHDMFMKVKGKVYKNKCVLMESMHKS-----------------------SRERKFS 94

Query: 176 RREERLAQGP-GEKAPQAP 193
             E RLA  P GEK   AP
Sbjct: 95  GSEMRLALEPEGEKTASAP 113