Jatropha Genome Database

JcCA0146311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146311.10 + phase: 0 /TE/pseudo/partial
         (334 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403...    55   5e-08

>AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403
           REVERSE
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 11  DTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELWQKLDYYLDF 70
           +T  K+W+     +    +  + Y+LR+++   +QG  ++ +YF KLS++W +L  Y   
Sbjct: 106 ETAHKMWEDLRRVFVPCVD-LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPI 164

Query: 71  --------QARCTDDATQVQKXIEVERVYDFLAG--LNNEYDQIRIQVLGRDPFPSLRQA 120
                      CT  A + +   E E+ Y+FL G  LN  ++ +  +++ + P PSL +A
Sbjct: 165 PECKCGGCNCECTKRAEEAR---EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEA 221

Query: 121 YSFLQQEET 129
           ++ ++  E+
Sbjct: 222 FAMVKDAES 230