Jatropha Genome Database

JcCA0146281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.20 + phase: 0 
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10810.1 | Symbols:  | unknown protein | chr4:6645986-6646231...    65   1e-11
AT4G24026.1 | Symbols:  | unknown protein | chr4:12486415-124866...    52   7e-08

>AT4G10810.1 | Symbols:  | unknown protein | chr4:6645986-6646231
          REVERSE
          Length = 81

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 14 SCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKDRPLML 65
          S +KLD+ A+WV + V SAFFASLERCSC+NL+T+D +DE +E + +RPL L
Sbjct: 21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEE-SHNRPLAL 71


>AT4G24026.1 | Symbols:  | unknown protein |
          chr4:12486415-12486651 FORWARD
          Length = 78

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 10 SGFISCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEG-AKDRPLML 65
          S   S +K+D  A+W+ + V SAFF SLERC+C+NL+T+  +D+DD+  +  RPL L
Sbjct: 12 STTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPLAL 68