Jatropha Genome Database

JcCA0146281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.10 - phase: 0 /TE
         (228 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H ...    53   1e-07

>AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H |
           chr5:17201414-17202323 REVERSE
          Length = 258

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 15/188 (7%)

Query: 4   DFHSVRDSPSLQVFTLVLWNIWKWRDDRIFSGNVDELSVRVQVLKPRCCPMIXXXXXXXX 63
           D  S  D P   +F +++W  WKWR   IF  N  +   RV+ +K     +         
Sbjct: 68  DRSSCEDIPWSTIFAVIIWWGWKWRCSNIFGENT-KCRDRVKFVKEWVVEVYRAHLGNAL 126

Query: 64  XXXXXXXXX--------------XXXPGSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGT 109
                                      G+     GLA  GGV+R+  G W  GF + +G 
Sbjct: 127 VGSTQPRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGR 186

Query: 110 CSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMIKAPANDNLRFAGILQQCRALL 169
           CS+              AW+ +  +V +E+DS   +  +K   +D+   + +++ C   L
Sbjct: 187 CSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFL 246

Query: 170 SKPCTIVF 177
            K   I+ 
Sbjct: 247 QKDWRILL 254