Jatropha Genome Database

JcCA0145861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.20 + phase: 0 /partial
         (225 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15563.1 | Symbols:  | unknown protein | chr4:8891771-8892348...   131   3e-31

>AT4G15563.1 | Symbols:  | unknown protein | chr4:8891771-8892348
           FORWARD
          Length = 167

 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 60  HREMAGKATTVIEFVEHRSLSQSLEIGDYNKAIQDLWLMRLAFKDIQMFLFKPXXXXXXX 119
           H+EMA +A+ VI++V     + SLE G Y  A++ +  MR  F+D+++F FKP       
Sbjct: 3   HKEMASRASEVIKYVTKSPATLSLEAGIYLHAVETMSSMRFGFQDVELFFFKPNLSVLLN 62

Query: 120 XXXXHYCIFCLKLPARNVMDALLSCKISEREVCVNWWKLGRWFYGFRMRDESHSRKVSLT 179
                YCI  LK     V+D L  C ISE+ V V W  LGRW  G RMRD+  SR+VSL 
Sbjct: 63  LIGLIYCIQHLKPRREQVVDVLRQCGISEQLVWVKWLTLGRWSGGSRMRDDIVSRQVSLV 122

Query: 180 DLTTDKGEDVLGVLQRGAIHEVLRVEIFISNATTSPWSSQSSHRQY 225
           D+ T K E VL VLQRG +HEVLRV I   +   +P SS S+ R Y
Sbjct: 123 DVVTGKEETVLRVLQRGVVHEVLRVCISTVDLACAPCSS-STIRNY 167