Jatropha Genome Database

JcCA0145861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.10 - phase: 0 
         (418 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18660.1 | Symbols: PCB2 | PCB2 (PALE-GREEN AND CHLOROPHYLL B...   603   e-173
AT3G18890.1 | Symbols:  | binding / catalytic/ coenzyme binding ...    59   4e-09
AT2G34460.1 | Symbols:  | flavin reductase-related | chr2:145296...    58   1e-08

>AT5G18660.1 | Symbols: PCB2 | PCB2 (PALE-GREEN AND CHLOROPHYLL B
           REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl
           reductase | chr5:6220872-6222125 REVERSE
          Length = 417

 Score =  603 bits (1556), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/418 (72%), Positives = 346/418 (82%), Gaps = 6/418 (1%)

Query: 1   MSLCFSSNLFTLHSPKFYSYKTRFS-TQFIDQIQVHSFSCSLSPSTPILSEPFKFNRHRL 59
           MSLC S N+F  +SPK    KT F  ++FI Q QV S   + +  T   S   K+ R RL
Sbjct: 1   MSLCSSFNVFASYSPK---PKTIFKDSKFISQFQVKSSPLASTFHTNESSTSLKYKRARL 57

Query: 60  NPIXXXXXXXXXXXXX-XFRRKNPKDINILVAGSTGYIGKFVVKELVNRGFNVIAIARER 118
            PI               FR K+PKDIN+LV GSTGYIG+FVVKE++ RGFNVIA+ARE+
Sbjct: 58  KPISSLDSGISEIATSPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREK 117

Query: 119 SGIRGKNSKEDTLNDLQGANVCFSDVTNLDILDKSLNDLGVSIDVVVSCLASRSGGIKDS 178
           SGIRGKN KE+TL  LQGANVCFSDVT LD+L+KS+ +LG  +DVVVSCLASR+GGIKDS
Sbjct: 118 SGIRGKNDKEETLKQLQGANVCFSDVTELDVLEKSIENLGFGVDVVVSCLASRNGGIKDS 177

Query: 179 WKIDYEATKNSLVAGRNNGANHFVLLSAICVQKPLLEFQRAKLKFEADLMKEAEE-DNGF 237
           WKIDYEATKNSLVAG+  GA HFVLLSAICVQKPLLEFQRAKLKFEA+LM  AE+ D+ F
Sbjct: 178 WKIDYEATKNSLVAGKKFGAKHFVLLSAICVQKPLLEFQRAKLKFEAELMDLAEQQDSSF 237

Query: 238 SYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGKLCACKPISESDLASFIADCVLSEDKI 297
           +YSIVRPTAFFKSLGGQVE+VKDGKPYVMFGDGKLCACKPISE DLA+FIADCVL E+KI
Sbjct: 238 TYSIVRPTAFFKSLGGQVEIVKDGKPYVMFGDGKLCACKPISEQDLAAFIADCVLEENKI 297

Query: 298 NKVLPIGGPGKALTSLEQGEMLFRLLGKEPKFLKVPIGIMDFAIGILDFLANIFPSMEDA 357
           N+VLPIGGPGKALT LEQGE+LF++LG+EPKFLKVPI IMDF IG+LD +A IFPS+ +A
Sbjct: 298 NQVLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDFVIGVLDSIAKIFPSVGEA 357

Query: 358 AEFGKIGRYYAAESMLVLDSETGDYSAEKTPSYGKDTLEEFFERVLRDGMAGQELGEQ 415
           AEFGKIGRYYAAESML+LD ETG+YS EKTPSYGKDTLE+FF +V+R+GMAGQELGEQ
Sbjct: 358 AEFGKIGRYYAAESMLILDPETGEYSEEKTPSYGKDTLEDFFAKVIREGMAGQELGEQ 415


>AT3G18890.1 | Symbols:  | binding / catalytic/ coenzyme binding |
           chr3:6511169-6514729 FORWARD
          Length = 641

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 24/176 (13%)

Query: 87  ILVAGSTGYIGKFVVKELVNRGFNVIAIAR--ERSGIRGKNSKEDTLNDLQGANVCFSDV 144
           + VAG+TG +G   V+EL+  GF V A  R  +R+G   ++ KE     LQ  +     V
Sbjct: 84  VFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKE---MKLQNTDEGTQPV 140

Query: 145 TNLDILDKSLND-------LGVSIDVVVSCLASRSGGIKD---SWKIDYEATKNSLVAGR 194
             L+I++  L         LG +  V++ C+ +    I D    ++IDY ATKN + A  
Sbjct: 141 EKLEIVECDLEKKDSIQPALG-NASVIICCIGASEKEISDITGPYRIDYLATKNLVDAAT 199

Query: 195 NNGANHFVLLSAICVQKPLLEFQRAKLKFEADLM---KEAEE---DNGFSYSIVRP 244
           +   N+F+L++++   K    F  A L     ++   ++AEE   ++G +Y+IVRP
Sbjct: 200 SAKVNNFILVTSLGTNK--FGFPAAILNLFWGVLCWKRKAEEALIESGLNYAIVRP 253


>AT2G34460.1 | Symbols:  | flavin reductase-related |
           chr2:14529635-14530732 FORWARD
          Length = 280

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 29/178 (16%)

Query: 83  KDINILVAGSTGYIGKFVVKELVNRGFNVIAIARERSGIRGKNSKEDTLNDLQGANVCFS 142
           K   + VAG+TG  GK +V++L++RGF V      ++G+R     + +  D     +  +
Sbjct: 45  KTKKVFVAGATGQTGKRIVEQLLSRGFAV------KAGVRDVEKAKTSFKDDPSLQIVRA 98

Query: 143 DVTNLDILDKSLNDLGVSIDVVVSCLASRSG-GIKDSWKIDYEATKNSLVAGRNNGANHF 201
           DVT  +  DK    +G     V+     R G  I   WK+D   T N + A R  G   F
Sbjct: 99  DVT--EGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKF 156

Query: 202 VLLSAICVQ--------KPLLEFQR-------AKLKFEADLMKEAEEDNGFSYSIVRP 244
           VL+S+I V          P   F         AKL+ E  + K     +G +Y+IVRP
Sbjct: 157 VLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKK-----SGINYTIVRP 209