Jatropha Genome Database

JcCA0145841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145841.10 - phase: 0 /partial
         (86 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03810.1 | Symbols: EDA30 | EDA30 (embryo sac development arr...    56   5e-09

>AT3G03810.1 | Symbols: EDA30 | EDA30 (embryo sac development
          arrest 30) | chr3:972190-975901 REVERSE
          Length = 656

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 23 VIHLSITKFSGSSLITYAPKDSGINFPPLADTQSVRYIRNKRLWGVVKPLQSLQPYANPR 82
          V+HLS+TK SG  L   A  +   +F  L   Q     RNK LW  VK L++LQPYANPR
Sbjct: 23 VVHLSMTKSSGVQLAYSARDNLWQDFDSLLGAQD---FRNKHLWRPVKSLETLQPYANPR 79

Query: 83 SNYP 86
          ++YP
Sbjct: 80 NSYP 83