Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.10 + phase: 1 /partial
         (154 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18525.1 | Symbols:  | ATP binding / protein kinase/ protein ...   149   9e-37
AT5G23430.2 | Symbols:  | transducin family protein / WD-40 repe...    50   7e-07
AT5G23430.1 | Symbols:  | transducin family protein / WD-40 repe...    50   7e-07
AT5G08390.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    48   3e-06

>AT5G18525.1 | Symbols:  | ATP binding / protein kinase/ protein
            serine/threonine kinase/ protein tyrosine kinase |
            chr5:6146932-6153658 REVERSE
          Length = 1639

 Score =  149 bits (375), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 104/172 (60%), Gaps = 21/172 (12%)

Query: 2    GSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLVS 61
            GS     DG   SPSWIAAG SSG CRLFDLR    I+SWRAHDGYVTKL APE +LLVS
Sbjct: 1470 GSQTKHGDGASVSPSWIAAGFSSGQCRLFDLRENGFISSWRAHDGYVTKLVAPESHLLVS 1529

Query: 62   SSLDRTLRIWDLR-----SPLFLKVIQMGYPVSLFGV--KMLFRFPKIRLG-FQLYPD-- 111
            SSLD+TLRIWDLR      P  +K    G  VS F +  K +    +  +G F L     
Sbjct: 1530 SSLDKTLRIWDLRKSWTPQPFVVKGHNDG--VSGFSIWGKDVISISRNNIGIFSLAKSQD 1587

Query: 112  ---------LLKKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                     + +KLY  + G +  S LS+I +LPFSRLF+VG  DG+LRICC
Sbjct: 1588 EEEQQQQRIIPQKLYMAEKGGRVKSDLSTICVLPFSRLFIVGAHDGHLRICC 1639


>AT5G23430.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:7894073-7899862 REVERSE
          Length = 836

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +++DL +G ++  +++H+G +  L   P ++LL + S DRT++ W
Sbjct: 153 PDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFW 212

Query: 72  DLRSPLFLKVIQMGYPVSLFGVKML 96
           DL +    ++I  G P +  GV+ L
Sbjct: 213 DLET---FELIGSGGPETA-GVRCL 233


>AT5G23430.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:7894073-7899862 REVERSE
          Length = 837

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +++DL +G ++  +++H+G +  L   P ++LL + S DRT++ W
Sbjct: 153 PDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFW 212

Query: 72  DLRSPLFLKVIQMGYPVSLFGVKML 96
           DL +    ++I  G P +  GV+ L
Sbjct: 213 DLET---FELIGSGGPETA-GVRCL 233


>AT5G08390.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22
           plant structures; EXPRESSED DURING: 13 growth stages;
           CONTAINS InterPro DOMAIN/s: WD40 repeat-like
           (InterPro:IPR011046), WD40 repeat, region
           (InterPro:IPR017986), WD40/YVTN repeat-like
           (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680);
           BEST Arabidopsis thaliana protein match is: transducin
           family protein / WD-40 repeat family protein
           (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722
           proteins in 748 species: Archae - 68; Bacteria - 7813;
           Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses -
           6; Other Eukaryotes - 12173 (source: NCBI BLink). |
           chr5:2701448-2706910 FORWARD
          Length = 839

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   WI +G      +++DL +G ++  +++H+G +  L   P ++LL + S D+T++ W
Sbjct: 153 PDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFW 212

Query: 72  DLRS 75
           DL +
Sbjct: 213 DLET 216