Jatropha Genome Database

JcCA0145571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145571.10 - phase: 0 /partial
         (350 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27980.1 | Symbols: DPL1, ATDPL1 | DPL1; carboxy-lyase/ catal...   475   e-134
AT3G17760.2 | Symbols: GAD5 | GAD5 (glutamate decarboxylase 5); ...    50   2e-06
AT3G17760.1 | Symbols: GAD5 | GAD5 (glutamate decarboxylase 5); ...    50   2e-06

>AT1G27980.1 | Symbols: DPL1, ATDPL1 | DPL1; carboxy-lyase/
           catalytic/ pyridoxal phosphate binding |
           chr1:9748812-9752618 FORWARD
          Length = 544

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/318 (73%), Positives = 274/318 (86%)

Query: 33  VKSILREFRVSANSFLSEYEPLDLLIAPFLTFLLARILRSFLRVIYENGLKATVLGFFMS 92
           +KS+L + R S NS LSE+EPL LL+ P ++  LA+I+ S   V++E GLKA ++GF M 
Sbjct: 9   MKSMLIQARGSLNSRLSEFEPLVLLLVPLVSLFLAQIIGSVFGVVHEKGLKACLIGFIMG 68

Query: 93  FIKLVPGVKSYIDAEKQKVVDQLQSGTKSKRESWRSELPREGLGTRVIEEMKEEKRNDVV 152
            +K++PGV++YIDAEKQKVVDQLQSG+ SK+++    LP +GLG  V+E+M+ EKRND +
Sbjct: 69  LLKMIPGVQNYIDAEKQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAI 128

Query: 153 WQGKCSGTVYIGGSESEGHFALINEACSMFAHTNPLHSDVFQSVARFEAEVVSMTASLFG 212
           WQGKCSGTVYIGG+ESEGHF+LIN+ACSMFAHTNPLH DVFQSV RFE+EVV+MTA+L G
Sbjct: 129 WQGKCSGTVYIGGAESEGHFSLINQACSMFAHTNPLHIDVFQSVVRFESEVVAMTAALLG 188

Query: 213 GKEKASGGEICGNMTSGGTESILLAVKSSRDYMKAKKGITRPEMIIPESGHSAYDKAAQY 272
            KE ASGG+ICGNMTSGGTESI+LAVKSSRDYMK KKGITRPEMIIPESGHSAYDKAAQY
Sbjct: 189 SKETASGGQICGNMTSGGTESIVLAVKSSRDYMKYKKGITRPEMIIPESGHSAYDKAAQY 248

Query: 273 FNIKLWRVPVNKKFEADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGELAFQYGIC 332
           F IKLWRVPV+K F ADVKA RRHIN+NTI+IVGSAPGFPHGIIDPIEELG+LA  YGIC
Sbjct: 249 FKIKLWRVPVDKDFRADVKATRRHINRNTIMIVGSAPGFPHGIIDPIEELGQLALSYGIC 308

Query: 333 LHVDLCLGGFVLPFAHNL 350
            HVDLCLGGFVLPFA  L
Sbjct: 309 FHVDLCLGGFVLPFARKL 326


>AT3G17760.2 | Symbols: GAD5 | GAD5 (glutamate decarboxylase 5);
           calmodulin binding | chr3:6078893-6080838 REVERSE
          Length = 494

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 186 NPLHSDVFQSVARFEAEVVSMTASLFG---GKEKASGGEICGNMTSGGTESILLA-VKSS 241
           N +  D +      +   V+M A+LF    G+++A+ G  CG  T G +E+I+LA +   
Sbjct: 82  NYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG--CG--TVGSSEAIMLAGLAFK 137

Query: 242 RDYMKAKKG----ITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKKFEA-DVKAIRRH 296
           R +   +K     I +P ++   +    ++K A+YF ++L  V +++ +   D       
Sbjct: 138 RKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEDYYVMDPAKAVEM 197

Query: 297 INKNTILIVGSAPGFPHGIIDPIEELGELAFQ------YGICLHVDLCLGGFVLPFAH 348
           +++NTI +         G  + +++L +L  +      +   +HVD   GGF+ PF +
Sbjct: 198 VDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETPIHVDAASGGFIAPFLY 255


>AT3G17760.1 | Symbols: GAD5 | GAD5 (glutamate decarboxylase 5);
           calmodulin binding | chr3:6078893-6080838 REVERSE
          Length = 494

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 186 NPLHSDVFQSVARFEAEVVSMTASLFG---GKEKASGGEICGNMTSGGTESILLA-VKSS 241
           N +  D +      +   V+M A+LF    G+++A+ G  CG  T G +E+I+LA +   
Sbjct: 82  NYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG--CG--TVGSSEAIMLAGLAFK 137

Query: 242 RDYMKAKKG----ITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKKFEA-DVKAIRRH 296
           R +   +K     I +P ++   +    ++K A+YF ++L  V +++ +   D       
Sbjct: 138 RKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEDYYVMDPAKAVEM 197

Query: 297 INKNTILIVGSAPGFPHGIIDPIEELGELAFQ------YGICLHVDLCLGGFVLPFAH 348
           +++NTI +         G  + +++L +L  +      +   +HVD   GGF+ PF +
Sbjct: 198 VDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETPIHVDAASGGFIAPFLY 255