Jatropha Genome Database

JcCA0144801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144801.10 + phase: 0 
         (249 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61410.2 | Symbols: RPE | RPE; catalytic/ ribulose-phosphate ...   458   e-129
AT5G61410.1 | Symbols: RPE, EMB2728 | RPE; catalytic/ ribulose-p...   458   e-129
AT3G01850.2 | Symbols:  | ribulose-phosphate 3-epimerase, cytoso...   157   7e-39
AT3G01850.1 | Symbols:  | ribulose-phosphate 3-epimerase, cytoso...   157   7e-39
AT1G63290.1 | Symbols:  | ribulose-phosphate 3-epimerase, cytoso...   146   9e-36

>AT5G61410.2 | Symbols: RPE | RPE; catalytic/ ribulose-phosphate
           3-epimerase | chr5:24684085-24685836 REVERSE
          Length = 281

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/242 (92%), Positives = 232/242 (95%)

Query: 6   RKIHTVVKATARVDKFSKSDIIVSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFV 65
           R+ H +VKA++RVD+FSKSDIIVSPSILSANFAKLGEQVKAVE+AGCDWIHVDVMDGRFV
Sbjct: 38  RRTHGIVKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV 97

Query: 66  PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT 125
           PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT
Sbjct: 98  PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRT 157

Query: 126 VNQIKDLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQGFIESQVKKISDLR 185
           VNQIK LGAKAGVVLNP TPLSAIEYVLD+VDLVLIMSVNPGFGGQ FIESQVKKISDLR
Sbjct: 158 VNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217

Query: 186 RLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPV 245
           ++CAEKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP 
Sbjct: 218 KMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPA 277

Query: 246 AV 247
           AV
Sbjct: 278 AV 279


>AT5G61410.1 | Symbols: RPE, EMB2728 | RPE; catalytic/
           ribulose-phosphate 3-epimerase | chr5:24684085-24685836
           REVERSE
          Length = 281

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/242 (92%), Positives = 232/242 (95%)

Query: 6   RKIHTVVKATARVDKFSKSDIIVSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFV 65
           R+ H +VKA++RVD+FSKSDIIVSPSILSANFAKLGEQVKAVE+AGCDWIHVDVMDGRFV
Sbjct: 38  RRTHGIVKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV 97

Query: 66  PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT 125
           PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT
Sbjct: 98  PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRT 157

Query: 126 VNQIKDLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQGFIESQVKKISDLR 185
           VNQIK LGAKAGVVLNP TPLSAIEYVLD+VDLVLIMSVNPGFGGQ FIESQVKKISDLR
Sbjct: 158 VNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217

Query: 186 RLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPV 245
           ++CAEKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP 
Sbjct: 218 KMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPA 277

Query: 246 AV 247
           AV
Sbjct: 278 AV 279


>AT3G01850.2 | Symbols:  | ribulose-phosphate 3-epimerase,
           cytosolic, putative / pentose-5-phosphate 3-epimerase,
           putative | chr3:300428-301987 REVERSE
          Length = 225

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 130/217 (59%), Gaps = 8/217 (3%)

Query: 28  VSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 87
           ++PS+LS++FA L  +   +   G +W+H+D+MDG FVPN+TIG  V+++LR  T+  LD
Sbjct: 6   IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLD 65

Query: 88  VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKDLGAKAGVVLNPATPLS 147
            HLM+  P   V    KAGA   + H E +   +  + V +IK  G + GV L P TP+ 
Sbjct: 66  CHLMVTNPMDYVAQMAKAGASGFTFHVEVAQD-NWQQLVEKIKSTGMRPGVALKPGTPVE 124

Query: 148 AIEYVLD---VVDLVLIMSVNPGFGGQGFIESQVKKISDLRRLCAEKGVNPWIEVDGGVG 204
            +  +++    V++VL+M+V PGFGGQ F+   + K+  LR    +K     I+VDGG+G
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALR----QKYPTLDIQVDGGLG 180

Query: 205 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 241
           P        AGAN +VAGS+VFGA +  + I  ++TS
Sbjct: 181 PSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTS 217


>AT3G01850.1 | Symbols:  | ribulose-phosphate 3-epimerase,
           cytosolic, putative / pentose-5-phosphate 3-epimerase,
           putative | chr3:300428-301987 REVERSE
          Length = 225

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 130/217 (59%), Gaps = 8/217 (3%)

Query: 28  VSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 87
           ++PS+LS++FA L  +   +   G +W+H+D+MDG FVPN+TIG  V+++LR  T+  LD
Sbjct: 6   IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLD 65

Query: 88  VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKDLGAKAGVVLNPATPLS 147
            HLM+  P   V    KAGA   + H E +   +  + V +IK  G + GV L P TP+ 
Sbjct: 66  CHLMVTNPMDYVAQMAKAGASGFTFHVEVAQD-NWQQLVEKIKSTGMRPGVALKPGTPVE 124

Query: 148 AIEYVLD---VVDLVLIMSVNPGFGGQGFIESQVKKISDLRRLCAEKGVNPWIEVDGGVG 204
            +  +++    V++VL+M+V PGFGGQ F+   + K+  LR    +K     I+VDGG+G
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALR----QKYPTLDIQVDGGLG 180

Query: 205 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 241
           P        AGAN +VAGS+VFGA +  + I  ++TS
Sbjct: 181 PSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTS 217


>AT1G63290.1 | Symbols:  | ribulose-phosphate 3-epimerase,
           cytosolic, putative / pentose-5-phosphate 3-epimerase,
           putative | chr1:23472095-23473590 REVERSE
          Length = 227

 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 127/217 (58%), Gaps = 8/217 (3%)

Query: 28  VSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 87
           ++PS+LS++FA L  + K +   G +W+H+D+MDG FV N+TIG  V+++LR  T+  LD
Sbjct: 8   IAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTNAYLD 67

Query: 88  VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKDLGAKAGVVLNPATPLS 147
            HLM+  P   V    KAGA   + H E +   +    V +IK  G + GV L P TP+ 
Sbjct: 68  CHLMVTNPMDYVDQMAKAGASGFTFHVEVAQE-NWQELVKKIKAAGMRPGVALKPGTPVE 126

Query: 148 AIEYVLD---VVDLVLIMSVNPGFGGQGFIESQVKKISDLRRLCAEKGVNPWIEVDGGVG 204
            +  +++    V++VL+M+V PGFGGQ F+ S + K+  LR     K     IEVDGG+G
Sbjct: 127 QVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRN----KYPTLDIEVDGGLG 182

Query: 205 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 241
           P        AGAN +VAGS+VFGA    + I  ++ S
Sbjct: 183 PSTIDAAAAAGANCIVAGSSVFGAPKPGDVISLLRAS 219