Jatropha Genome Database

JcCA0144471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144471.10 + phase: 0 
         (180 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58110.1 | Symbols:  | ATPase activator/ chaperone binding | ...   225   1e-59

>AT5G58110.1 | Symbols:  | ATPase activator/ chaperone binding |
           chr5:23515275-23516479 FORWARD
          Length = 196

 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 132/153 (86%), Gaps = 1/153 (0%)

Query: 3   EEKQQQPPQGASYTYWVREATADAAPLPLPKKLSTNDLITSQSQPPTLGSVWNRAGTWEE 62
           E ++++  +G+SY YWVREAT+DAAP PLP+KLS ND ++  + P +LGS+WNRAGTWEE
Sbjct: 2   EREEEKTKEGSSYRYWVREATSDAAPPPLPQKLSNND-VSLNTAPASLGSLWNRAGTWEE 60

Query: 63  KNLNKWATDRIKELLVSVGSLEFSCGKAEITEVSKCLGDAFLVTVRNKKRVGYTYELTLK 122
           K+L KWATDR+KELL SVGSL+FS GKAEI +V++C+GDAFLVTVRNKKRVGYTYEL+LK
Sbjct: 61  KSLTKWATDRLKELLGSVGSLQFSSGKAEIIDVNRCVGDAFLVTVRNKKRVGYTYELSLK 120

Query: 123 IKGEWTVKEEKKNVKAHIDIPEFSFGELDDLQV 155
           ++GEW+ +E  K VK  ++IPEFSFGELDDL+V
Sbjct: 121 VEGEWSFEENMKKVKGSLEIPEFSFGELDDLEV 153