Jatropha Genome Database

JcCA0144211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144211.10 + phase: 1 /partial/short
         (33 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |...    64   2e-11

>AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |
           chr4:9915916-9918049 FORWARD
          Length = 440

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 30/33 (90%)

Query: 1   LMATYHAKNEYCLFSDMCQGYRVFVSVISQLEE 33
           LMATYHAKNEYCL +DMCQG+ VF+ +ISQLE+
Sbjct: 407 LMATYHAKNEYCLLTDMCQGFDVFIRIISQLEQ 439