Jatropha Genome Database

JcCA0143661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143661.10 + phase: 0 /pseudo/partial
         (221 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |...   213   6e-56

>AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |
           chr4:9915916-9918049 FORWARD
          Length = 440

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 104/113 (92%)

Query: 109 GVGVDALVKDGLLNKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAIN 168
           GVGVD LVKD LL+KLK GPL+WIDTADKQPC+GTGGMIPWKL  TGKLFHSGLAHKAIN
Sbjct: 174 GVGVDMLVKDKLLDKLKSGPLYWIDTADKQPCVGTGGMIPWKLQFTGKLFHSGLAHKAIN 233

Query: 169 PLELAMEALKEIQSRFYRDFPPHPKEKVYGFATPSTMKPTQWSYPGGGINQIP 221
            +ELAME LKEIQ+RFYRDFPPHP+E+VYGFATPSTMKPTQW YP GGINQIP
Sbjct: 234 AMELAMEGLKEIQARFYRDFPPHPQEEVYGFATPSTMKPTQWCYPAGGINQIP 286



 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 31/35 (88%)

Query: 6  EFLGELNRESFVSLLRKIIGESKHVQNNPPELIPR 40
          E +G L+++S+VSLL K+IGESK VQNNPPELIP+
Sbjct: 10 ESIGSLDKDSYVSLLSKLIGESKFVQNNPPELIPQ 44