Jatropha Genome Database

JcCA0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143221.10 - phase: 0 /partial
         (254 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein...   204   3e-53
AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein...   110   1e-24
AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein...    90   1e-18

>AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr1:6891654-6894400 REVERSE
          Length = 413

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/249 (46%), Positives = 161/249 (64%), Gaps = 28/249 (11%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDI 60
           VRLF+SE+SPSQVG  +QDHLQAK+   SHP+    DD LPPGF G   AN+  IKLSDI
Sbjct: 19  VRLFISEDSPSQVGSESQDHLQAKSPLASHPS----DDNLPPGFGGPFSANESQIKLSDI 74

Query: 61  PVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELE 120
           P+IKWKC  + +LD  W+VVAG+ESKEVE  N+RE+RVLEA YP  S+IPPNP+  A++E
Sbjct: 75  PLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGASSIPPNPSVPADVE 134

Query: 121 DLRLNDHQVPLIPITPIEDED-AVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAIS 179
           D   +D Q  +IPI P+ED+D A+D+ S+F       V ++               P+I+
Sbjct: 135 DSHHDDQQTIVIPILPVEDDDIAMDSASDFPTQSGVDVGTE---------------PSIT 179

Query: 180 NTPVNEKPAAGALLGVEPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKKLA 239
               +E  +  + L   PD++         I+ S +QGS+ID+DLL+KIL+NP+L++ L 
Sbjct: 180 ----DENTSTSSTLPAGPDIM----AALSAISNSKEQGSMIDQDLLIKILSNPKLVENLV 231

Query: 240 QDYGAASNV 248
            + G+A +V
Sbjct: 232 ANRGSAGSV 240


>AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr3:19013720-19016042 FORWARD
          Length = 521

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 28/256 (10%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDI 60
           V++F +E+SP+ V    Q H        S+P+       LPPGFEG   A  +   +S+I
Sbjct: 23  VKVFRTEDSPANVASQPQRH--------SYPSRKPRGPDLPPGFEGNHYA--VKPNVSNI 72

Query: 61  PVIKWKCPP-RFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAEL 119
           P IKWK PP +F ++ TW V  G  S E +  N R  +VLEA+YP  SAIP  P+ S  +
Sbjct: 73  PRIKWKRPPPKFSVNDTWLVGCGGGSSEWQNENLRISKVLEAIYPHRSAIPSRPSVSPAV 132

Query: 120 EDLRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSS--QSQLLASGILPPQYSIPA 177
           E    +D + P I +TPIEDE    +         + V++  Q QL    +   Q  +  
Sbjct: 133 EAECFDDSKTPAIRLTPIEDESESSSEESSNSKVESGVTANKQGQLETKPLCSTQEQV-- 190

Query: 178 ISNTPVNEKPAAGALLGVEPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKK 237
                         L G+ PD+          + K+ +QGSL+D +LL+K L++P+LIK 
Sbjct: 191 ------------SGLTGLAPDLSLAASAALTALMKTKEQGSLVDTELLIKFLSDPKLIKN 238

Query: 238 LAQDY-GAASNVQNTP 252
           L  D  G +S  +N P
Sbjct: 239 LITDTSGKSSETKNQP 254


>AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:26473507-26475566 REVERSE
          Length = 449

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 62/238 (26%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDI 60
           V+LFLS++ P +V                          LPPGFE    A +  I  S I
Sbjct: 21  VKLFLSDDCPVKVASN-----------------------LPPGFEATDYATKRII--SHI 55

Query: 61  PVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELE 120
           P IKWK PP FVLD    V +G +S E    N R  +VLEA YP  S IP  P+ +  +E
Sbjct: 56  PRIKWKRPPLFVLDDALLVGSGGKSIETRSENLRISKVLEAFYPHRSVIPSRPSLTLAVE 115

Query: 121 DLRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAISN 180
           +   +D + P IP+T +EDE   DA +E    + AP                        
Sbjct: 116 EEHYDDGKTPNIPLTHVEDER--DAAAESSHSFEAP------------------------ 149

Query: 181 TPVNEKPAAGALLGVEPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKKL 238
                     A+ G+ P++          + K  +QGS +D DLLVK+L++P++++ L
Sbjct: 150 ---------AAVSGLGPELSLLASAALSALTK--EQGSQVDPDLLVKLLSDPKIVENL 196