Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.30 + phase: 0 
         (191 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63480.1 | Symbols:  | unknown protein | chr5:25417317-254184...   168   2e-42

>AT5G63480.1 | Symbols:  | unknown protein | chr5:25417317-25418473
           FORWARD
          Length = 189

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 107/183 (58%), Gaps = 15/183 (8%)

Query: 16  QELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXXXXXXXXXPITAATNG 75
           QELA+EG+K LEETI+AA+QI+S+MNDELCNP+LW                   T  +NG
Sbjct: 15  QELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAAT--------TTGSNG 66

Query: 76  DVXXXXXXXXXXXXXXXXXXXTC-------NGALDEARFRYKNSVAALREVLAAIPNSQK 128
                                         N  LDEA  RYKNSV +LR VLAAIPNSQK
Sbjct: 67  SALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQK 126

Query: 129 AKAFETTNSSASPADHAEVEKLEEQASNLRKELVNKNACLKLLIDQLRDLITDISTWQSP 188
           AKA E  N   SP    E+EKLEEQA +LR E+  KN  +K LID+LR+LI DISTWQSP
Sbjct: 127 AKASEMQNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQSP 186

Query: 189 CSV 191
           CSV
Sbjct: 187 CSV 189