Jatropha Genome Database

JcCA0143091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.10 - phase: 0 
         (228 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein, ch...   238   2e-63

>AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein,
           chloroplast | chr4:12821496-12822389 REVERSE
          Length = 225

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 142/169 (84%), Gaps = 4/169 (2%)

Query: 61  PSLAIPSPNSLSSPVIPTTPFSQSKNLILGPEDGKIRPCPSTNPSCVSTNPKSSSFAFPL 120
           P+LAIPS +S S P+  TTPF+QSK +  G  +GKIRPCPSTNP CVSTNP SSSF+FPL
Sbjct: 60  PALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPL 116

Query: 121 TIPDDSTDNAIQKLQEAILKTQRNAKIQVIEDAPNGTYLQAEVD-GGFGRDVLEFLVKGD 179
           TIP+  T + I+KL+EAI+ TQ+N K  V+ED P G Y++AEV+ GGF RDV+EFLVK D
Sbjct: 117 TIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQD 176

Query: 180 VVAYRCMATKVTYVYPFTTALGDSKGQEERMKKIIEQLGWYAPSFDSMD 228
           VVAYRCMATKVT+VYPFTTA GDSKGQEER+KK+I+QLGWYAP+F+SM+
Sbjct: 177 VVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225