Jatropha Genome Database

JcCA0142871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142871.10 - phase: 0 /pseudo/partial
         (201 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56120.1 | Symbols:  | Met-10+ like family protein | chr3:208...   198   2e-51

>AT3G56120.1 | Symbols:  | Met-10+ like family protein |
           chr3:20823243-20826357 FORWARD
          Length = 468

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 108/120 (90%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           MFDESKFDV LKLWALRIPRE CK A+R+LNGY+L+  R+KPITEDPTCEK R +ILSE 
Sbjct: 1   MFDESKFDVNLKLWALRIPRELCKSASRILNGYMLNMPRIKPITEDPTCEKTRLVILSES 60

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSADHILKQILPPGVEIPSSFETI 120
           V+N DL++IP EKL++LKKL E+EVVP+S+TLGYSYWSADH+LKQILP G++IPSSFETI
Sbjct: 61  VKNADLSEIPEEKLNQLKKLSELEVVPHSVTLGYSYWSADHLLKQILPDGLDIPSSFETI 120